View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13975_low_8 (Length: 588)
Name: NF13975_low_8
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Original strand, 1103935 - 1104505
Alignment:
| Q |
1 |
tgaagcttgcatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattgt |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1103935 |
tgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcatggaaaaattgggatgatccgtcttcgggagattttacttgggctattgt |
1104034 |
T |
|
| Q |
101 |
ccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104035 |
ccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggtg |
1104134 |
T |
|
| Q |
201 |
actgttactcaaattgtcgaaacaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatt |
300 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1104135 |
actgttactcaaattgtcgaaacaaaatttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtaatgtttcaataacttatt |
1104234 |
T |
|
| Q |
301 |
tgaaccaaacacttgagaagcgtcaacgcattacatggattccagaagataatgattggagggtttatgaggaagtaccaagagatgattgtgatgccta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104235 |
tgaaccaaacacttgagaagcgtcaacgcattacatggattccagaagataatgattggagggtttatgaggaagtaccaagagatgattgtgatgccta |
1104334 |
T |
|
| Q |
401 |
taatccttgtggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacaca |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1104335 |
taatccttgtggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacaca |
1104434 |
T |
|
| Q |
501 |
tttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttgg |
571 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1104435 |
tttaattggacacaaggatgtgtgcgaaaaggcgaagaaacatggaattgtggtgtgaatgatggttttgg |
1104505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 571
Target Start/End: Original strand, 1046905 - 1047478
Alignment:
| Q |
1 |
tgaagcttgcatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattgt |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||| |
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|
| T |
1046905 |
tgaagcttggatgggacctaaaaattggtcttaatcgtccattaacttcttggaaaaattgggacgatccatcttcgggagatttaacttggggtattgt |
1047004 |
T |
|
| Q |
101 |
ccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || | |
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|
| T |
1047005 |
ccttcgtagtaatccagaaattgttttgaaaagaggatcagttgaaattcataggagtggtccttggaatggagttggatttagtggagcgcctatggag |
1047104 |
T |
|
| Q |
201 |
actgttac-tcaa--attgtcgaaacaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtgtggtttcaataactt |
297 |
Q |
| |
|
| |||||| |||| |||| | ||| | |||||||||| ||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
1047105 |
attgttacatcaactgttgttgttgcaagatctgtgaacaattcaaatgaggtttattactcatatagtcttgtaaacaagagtaatgtttcaataactt |
1047204 |
T |
|
| Q |
298 |
atttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaagataatgattggagggtttatgaggaagtaccaagagatgattgtgatgc |
397 |
Q |
| |
|
||||||||||||| ||| | ||||||||| ||||| |||||| || ||| |||||| | | |||| |||||||| |||||||||||||| |
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|
| T |
1047205 |
atttgaaccaaacgcttagtcttcacgaacgcattatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagatgattgtgatgt |
1047304 |
T |
|
| Q |
398 |
ctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggac |
497 |
Q |
| |
|
|||||||| |||||| || |||||||| || ||| ||| |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |
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|
| T |
1047305 |
ctataatcattgtggcccatatggaaattgcatttataacccgtctccaatttgtcaatgtttagatgggtttgagcctaaatcaccacaaaattgggac |
1047404 |
T |
|
| Q |
498 |
acatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttgg |
571 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1047405 |
gcatcaaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttgg |
1047478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 1071718 - 1072289
Alignment:
| Q |
1 |
tgaagcttgcatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattgt |
100 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| || |||| |||||| |
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|
| T |
1071718 |
tgaagcatggatgggacttaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggacgatccatcatcgggagatttaacatggggtattgt |
1071817 |
T |
|
| Q |
101 |
ccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggtg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
1071818 |
ccttcatagtaatccagaaattgtattgaaaaaaggatcagttgaaattcacaggagtggtccttggaatggagttggatttagtggagcacctatggag |
1071917 |
T |
|
| Q |
201 |
actgttac-tcaa--attgtcgaaacaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtgtggtttcaataactt |
297 |
Q |
| |
|
| | |||| |||| || | | |||| ||||| |||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1071918 |
attattacgtcaagtgttatagctacaacacctgtgatcaattcaaatgaagtttatttcacatatagtcttgtaaacaagagtatggtttcaataactt |
1072017 |
T |
|
| Q |
298 |
atttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaagataatgattggagggtttatgaggaagtaccaagagatgattgtgatgc |
397 |
Q |
| |
|
||||||||||||| ||| | | ||||| ||| ||||| |||||| || || |||||| | | | || |||||||| | |||||||||||| |
|
|
| T |
1072018 |
atttgaaccaaacgcttagtcttcatgaacgcgttatatggagtccagaggacaacacttggagcgatattcagtcagtaccaaaaaatgattgtgatgt |
1072117 |
T |
|
| Q |
398 |
ctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggac |
497 |
Q |
| |
|
|||||||| ||| || ||||||||||| || |||| ||| |||||||||||| ||||||||||| |||||||| |||||||| |||||||||||| || |
|
|
| T |
1072118 |
ctataatcgttgcggcccttatggaaattgcattcataacccgtctccaatttgccaatgtttagatgggtttgagcctaaatcaccacaaaattggtac |
1072217 |
T |
|
| Q |
498 |
acatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggtttt |
569 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1072218 |
gcatcaaattggacacaaggatgtgtgcgcaaaggtgaagaaacatggaattgtggtgtgaatgatcgtttt |
1072289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 1087379 - 1087951
Alignment:
| Q |
1 |
tgaagcttgcatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattgt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
1087379 |
tgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcatggaaaagttgggacgatccatcttcgggagatttaacttggggtattgt |
1087478 |
T |
|
| Q |
101 |
ccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggtg |
200 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| | || | |
|
|
| T |
1087479 |
ccttagtagtaatccagaagttgtattgaaaaaaggatcagttgagattcatagaactggcccttggaatggagttggatttagtggagcacctgtggag |
1087578 |
T |
|
| Q |
201 |
actgttactcaaattgtcgaa---acaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtgtggtttcaataactt |
297 |
Q |
| |
|
| ||||||| |||||| | | |||| | ||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
1087579 |
attgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataactt |
1087678 |
T |
|
| Q |
298 |
atttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaagataatgattggagggtttatgaggaagtaccaagagatgattgtgatgc |
397 |
Q |
| |
|
|||||||||||||| | | || |||| ||| |||||||||||||| || |||||| ||| |||| | |||| |||||||||||||| |
|
|
| T |
1087679 |
atttgaaccaaacaactagtcatcgcgaacgtgttaattggattccagaagacgatacttggagtgttattgagtcgttgccaaaagatgattgtgatgt |
1087778 |
T |
|
| Q |
398 |
ctataatccttgtggaccttatggaaaatgtattcctaatgagtctccaatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggac |
497 |
Q |
| |
|
|||||||| |||||| ||||||||||| || ||| ||| |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||| |
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|
| T |
1087779 |
ctataatcgttgtggcccttatggaaattgcgttcataacgagtctccaatttgccaatgtttagatgggtttgagcctaaatcgccaaaaaattgggac |
1087878 |
T |
|
| Q |
498 |
acatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttg |
570 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| || ||| |||| ||||| ||||||||| |||||| |
|
|
| T |
1087879 |
gcatcaaattggacacaaggatgtgtgcgcaaaggtgacgaagattggagatgtggagtgaatgatagttttg |
1087951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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