View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_86 (Length: 247)

Name: NF13975_low_86
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_low_86
NF13975_low_86
[»] chr5 (14 HSPs)
chr5 (13-227)||(41324819-41325033)
chr5 (13-227)||(41328796-41329010)
chr5 (13-227)||(41337536-41337750)
chr5 (39-227)||(41332729-41332917)
chr5 (18-227)||(41316755-41316964)
chr5 (13-219)||(31187930-31188136)
chr5 (23-216)||(41310967-41311164)
chr5 (13-219)||(31177867-31178073)
chr5 (39-224)||(41366911-41367096)
chr5 (39-223)||(41286926-41287109)
chr5 (13-219)||(31225642-31225848)
chr5 (83-227)||(41431970-41432114)
chr5 (13-59)||(41305235-41305281)
chr5 (140-223)||(14235879-14235962)
[»] chr4 (1 HSPs)
chr4 (35-222)||(17248769-17248956)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 41325033 - 41324819
Alignment:
Q  13 atactcattgatttggcaactctccctactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtat 112  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||| ||| | |  ||||||||||| | |||||| ||||| | | |||||||||||    
T  41325033 atacccattgatttggcatctctccctactttctcttggaagtaacaacggtacggttggatgtagcctcattgtttccttgatcacagattttaagtat 41324934  T
Q  113 agtaactgattcaactctgtctcatccacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaaca 212  Q
    |  || || | ||||||||||||||||||| |||||||  | ||||| |||||||||||||||  ||||||||| ||||| |||||||||||||||| ||    
T  41324933 atcaattggtgcaactctgtctcatccacaaaccccttcctatcaaaaactcttcttacctcagcttgtgcttcttccatcacctttggattctttacca 41324834  T
Q  213 tctcagacatcgccc 227  Q
    ||||||| |||||||    
T  41324833 tctcagatatcgccc 41324819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 41329010 - 41328796
Alignment:
Q  13 atactcattgatttggcaactctccctactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtat 112  Q
    |||| ||||||||||||| |||||||||||||||||||| | |||||||||| ||   ||||| | ||| | ||||||||||||||   | |||||||||    
T  41329010 atacccattgatttggcatctctccctactttctcttggaactaacaatggtgcaacgggatgcaacctcaatgtttctttgatgacggactttaagtat 41328911  T
Q  113 agtaactgattcaactctgtctcatccacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaaca 212  Q
    |  || || | |||||||||||||||||||||| ||||||| ||||||||||| ||||| |||  ||||||||| |||||||||||||| ||||| | ||    
T  41328910 atcaattggtgcaactctgtctcatccacatactcctttttatcaaacactctacttacttcatcttgtgcttcttccattacctttgggttcttcacca 41328811  T
Q  213 tctcagacatcgccc 227  Q
    |||||||||||||||    
T  41328810 tctcagacatcgccc 41328796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 41337750 - 41337536
Alignment:
Q  13 atactcattgatttggcaactctccctactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtat 112  Q
    |||| |||||||||  || ||||| |||||||||||||| |  ||||| ||| ||| |||||||||||| | |||||||||||||| ||| |||||||||    
T  41337750 atacccattgatttcacatctctctctactttctcttggaaccaacaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtat 41337651  T
Q  113 agtaactgattcaactctgtctcatccacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaaca 212  Q
       ||||| | |||||||||||| || |||||||||||||| |||||||||||||||||||||  ||||||||| ||||||||  |||| ||||||| ||    
T  41337650 gtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatca 41337551  T
Q  213 tctcagacatcgccc 227  Q
    |||| ||||||||||    
T  41337550 tctccgacatcgccc 41337536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 227
Target Start/End: Complemental strand, 41332917 - 41332729
Alignment:
Q  39 tactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatc 138  Q
    ||||||||||||| | |||||||||| ||   ||||||| ||| | ||||||||||| || | | ||||||||||  || || | |||||||| ||||||    
T  41332917 tactttctcttggaattaacaatggtgcaacgggatgtaacctcaatgtttctttgacgacagactttaagtatatcaattggtgcaactctgactcatc 41332818  T
Q  139 cacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaacatctcagacatcgccc 227  Q
    ||||||||||||||| ||||||||||||||||| ||| | |||||||| |||| ||||||||| ||||||| |||||||||||||||||    
T  41332817 cacatacccctttttatcaaacactcttcttacttcaatctgtgcttcttccaatacctttgggttctttaccatctcagacatcgccc 41332729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 41316964 - 41316755
Alignment:
Q  18 cattgatttggcaactctccctactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaa 117  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||  ||  |||||  | ||| | |||||||||||||| | | ||||||||||  ||    
T  41316964 cattgatttggcatctctccctactttctcttggaactaacaatggagcaacaggatacaacctcaatgtttctttgatgacagactttaagtatatcaa 41316865  T
Q  118 ctgattcaactctgtctcatccacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaacatctca 217  Q
     || | ||||||||||||||||||||| |||||||| ||||||||||||||||| |||  ||||||||  |||||||| ||||  || |||| |||| ||    
T  41316864 ttggtacaactctgtctcatccacatatccctttttatcaaacactcttcttacttcagcttgtgcttgttccattacatttgagttttttaccatcgca 41316765  T
Q  218 gacatcgccc 227  Q
    ||||||||||    
T  41316764 gacatcgccc 41316755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 31187930 - 31188136
Alignment:
Q  13 atactcattgatttggcaactctccctactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtat 112  Q
    |||| ||||||||||||| ||||| |||||||||||||| |  ||||| ||  ||| |||||||||||| | ||||||| |||| ||| | |||||||||    
T  31187930 atacccattgatttggcatctctctctactttctcttggaaccaacaaaggcacagaaggatgtagcctcaatgtttctctgattatagactttaagtat 31188029  T
Q  113 agtaactgattcaactctgtctcatccacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaaca 212  Q
    |  || || | ||||||||| ||||| |||||||||||||| ||||||||| ||||||| |||  ||||||||  ||||||| |||||| ||||||| ||    
T  31188030 atcaattggtgcaactctgtttcatcgacatacccctttttatcaaacacttttcttacttcagcttgtgctttctccattatctttgggttctttacca 31188129  T
Q  213 tctcaga 219  Q
    |||||||    
T  31188130 tctcaga 31188136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 41311164 - 41310967
Alignment:
Q  23 atttggcaactctccctactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgat 122  Q
    |||||||| |||||||||||||||||||| | |||||||||| ||   ||||| | ||| |||||||||||||||| | | ||||||||||  ||| | |    
T  41311164 atttggcatctctccctactttctcttggaactaacaatggtgcaactggatgcaacctcagtgtttctttgatgacaaactttaagtatatcaacaggt 41311065  T
Q  123 tcaactctgtctcatccacata----cccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaacatctc 216  Q
     ||||||  |||||||||||||    ||||||||| ||||||||||||||||| |||  ||||||||| |||||||||||||| ||||||| ||||||    
T  41311064 gcaactccatctcatccacatatatacccctttttatcaaacactcttcttacttcaacttgtgcttcttccattacctttgggttctttaccatctc 41310967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 31177867 - 31178073
Alignment:
Q  13 atactcattgatttggcaactctccctactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtat 112  Q
    |||| ||||||||||||| ||||| |||||||||||||| |  ||||| |||  || |||||| | ||||| |||||||||||| ||| | |||||||||    
T  31177867 atacccattgatttggcatctctctctactttctcttggaatcaacaaaggtaaagaaggatgcaaccttaatgtttctttgattatagactttaagtat 31177966  T
Q  113 agtaactgattcaactctgtctcatccacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaaca 212  Q
    |  || || | ||||||||| ||||| |||| ||||||||| ||||||||| ||||||| |||  ||||||||| | ||||| |||||| ||||||| ||    
T  31177967 atcaaatggtgcaactctgtttcatcgacatgcccctttttatcaaacacttttcttacttcagcttgtgcttccttcattatctttgggttctttatca 31178066  T
Q  213 tctcaga 219  Q
    |||||||    
T  31178067 tctcaga 31178073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 224
Target Start/End: Complemental strand, 41367096 - 41366911
Alignment:
Q  39 tactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatc 138  Q
    ||||||||||||| |  || ||||||  || |||||| | ||| | ||||||||||||||   ||||||||||||  || || | ||||||||||||||     
T  41367096 tactttctcttggaatcaataatggtatagaaggatgcaacctcattgtttctttgatgacggattttaagtatatcaattggtgcaactctgtctcatt 41366997  T
Q  139 cacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaacatctcagacatcg 224  Q
    |||||| |||||||| |||||||||||||||||||||  ||||||| | ||||||||| | |||||||||| ||||||||||||||    
T  41366996 cacatatccctttttatcaaacactcttcttacctcaacttgtgctgcttccattaccatcggattctttaccatctcagacatcg 41366911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 223
Target Start/End: Complemental strand, 41287109 - 41286926
Alignment:
Q  39 tactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatc 138  Q
    ||||||||||||| |  |||||||||  || |||||| | ||| | |||||||||||| | | | || |||||||  || || | ||||||||||||| |    
T  41287109 tactttctcttggaatcaacaatggtatagcaggatgcaacctcattgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcaac 41287010  T
Q  139 cacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaacatctcagacatc 223  Q
    ||||||||||||| | |||||||||||||||||||||  ||||||||  ||||| |||||||||||||||| |||||||||||||    
T  41287009 cacatacccctttctatcaaacactcttcttacctcagcttgtgctt-ttccatcacctttggattctttaccatctcagacatc 41286926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 31225848 - 31225642
Alignment:
Q  13 atactcattgatttggcaactctccctactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtat 112  Q
    |||| ||||||||||||| ||||| |||||||||||||| |  ||||| ||| |||  |||||||  || | ||||||| | || ||| | |||||||||    
T  31225848 atacccattgatttggcatctctctctactttctcttggaaccaacaaaggtgcagatggatgtaatctcaatgtttctctaattatagactttaagtat 31225749  T
Q  113 agtaactgattcaactctgtctcatccacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaaca 212  Q
    | ||| || | ||||||||| ||||| ||||  |||||||| |||||||   ||||||| |||  ||||||||| ||||||| |||||| ||||||| ||    
T  31225748 attaattggtgcaactctgtttcatcgacatgtccctttttatcaaacatgtttcttacttcagcttgtgcttcctccattatctttgggttctttacca 31225649  T
Q  213 tctcaga 219  Q
    |||||||    
T  31225648 tctcaga 31225642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 41432114 - 41431970
Alignment:
Q  83 agtgtttctttgatgatacattttaagtatagtaactgattcaactctgtctcatccacatacccctttttgtcaaacactcttcttacctcactttgtg 182  Q
    |||||||||||||||||| | || |||||||  || |  | |||||| ||||||||||||||||| ||  | |||||||||||||||||||||  |||||    
T  41432114 agtgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaacactcttcttacctcagcttgtg 41432015  T
Q  183 cttcatccattacctttggattctttaacatctcagacatcgccc 227  Q
    |||| ||||| || || || |||||   |||||||||||||||||    
T  41432014 cttcttccatcacattcgggttcttcgccatctcagacatcgccc 41431970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 41305281 - 41305235
Alignment:
Q  13 atactcattgatttggcaactctccctactttctcttgggagtaaca 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41305281 atactcattgatttggcaactctccctactttctcttgggagtaaca 41305235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 14235962 - 14235879
Alignment:
Q  140 acatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaacatctcagacatc 223  Q
    |||||||||||| | |||||| | ||||||||||||  ||||||||| ||||| ||| | || |||||||  ||||||||||||    
T  14235962 acatacccctttctatcaaactcccttcttacctcagcttgtgcttcttccatcaccctagggttctttacaatctcagacatc 14235879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 222
Target Start/End: Original strand, 17248769 - 17248956
Alignment:
Q  35 tccctactttctcttgggagtaacaatggtccaggaggatgtagccttagtgtttctttgatgatacattttaagtatagtaactgattcaactctgtct 134  Q
    |||||||||| ||| || |  ||||||||| ||  |||||| ||||| |||||||||||||||| | | |||||||||| ||| |||| |||||| || |    
T  17248769 tccctactttgtctaggaatcaacaatggtacaataggatgcagcctcagtgtttctttgatgacagaatttaagtatattaattgatccaactccgttt 17248868  T
Q  135 catccacatacccctttttgtcaaacactcttcttacctcactttgtgcttcatccattacctttggattctttaacatctcagacat 222  Q
    |||| |||||||||||| | ||||| || ||||||||||||  ||||||| | ||||| |||||||| || ||||  |||||||||||    
T  17248869 catctacatacccctttctatcaaaaacacttcttacctcagcttgtgctgcttccatcacctttgggttttttattatctcagacat 17248956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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