View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_87 (Length: 246)
Name: NF13975_low_87
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_87 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 4815832 - 4815596
Alignment:
| Q |
1 |
atatgtatcaaattctaagttgcaacattagctcttaattacagtaacatttttcctggtaattgaaaaatgcattattcttaccgcataaattctaatt |
100 |
Q |
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| T |
4815832 |
atatgtatcaaattctaagttgcaacattaactcttaattacagtaacattcttcctggtaattgaaaaatgcattattcttaccgcataaattctaatt |
4815733 |
T |
|
| Q |
101 |
gttattgttacaaacaataacaatccgaaacggttacctgatgagttttcattcatatatt-------tcgtcttgtcagcacactgagatatttcacaa |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |
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| T |
4815732 |
gttattgttacaaacaataacaatccgaaacggttacctgatgagttttcattcatatatttcgtatttcgtgttgtcagcacactgagatatttcac-a |
4815634 |
T |
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| Q |
194 |
aaaatcatcagttactatttcttctacttcaacactat |
231 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
4815633 |
aaaatcatcagttactatttcttctgcttcaacactat |
4815596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 23486627 - 23486552
Alignment:
| Q |
155 |
atatatttcgtcttgtcagcacactgagatatttcacaaaaaatcatcagttactatttcttctacttcaacactat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| |
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| T |
23486627 |
atatatttcgtcttgtcagcacactgagatatttcaca-aaaatcatcggttactatttcttctgcttcaacactat |
23486552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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