View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_88 (Length: 244)
Name: NF13975_low_88
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_88 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 49005130 - 49005365
Alignment:
| Q |
9 |
actttacttgaaaatatgtaatcatgagtcatgacatttggttaaaattgttggaggtatggtaatagtaatgacagataaatctatagcatcttagttt |
108 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49005130 |
actttacttgaaaatatgtaatcatcattcatgacatttggttaaaattgttggaggtatggtaatagtaatgacagataaatctatagcatcttagttt |
49005229 |
T |
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| Q |
109 |
gaaggatggcatttcagaaacaggaccaatgtttcttgactaaagaaagagatgcagcagtagtccaacctttttccccctaaatgttattcttttctga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49005230 |
gaaggatggcatttcagaaacaggaccaatgtttcttgactaaagaaagagatgcagtagtagtccaacctttttccccctaaatgttattcttttttga |
49005329 |
T |
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| Q |
209 |
acttgcctcgactaatttgttgatgatgatttgagc |
244 |
Q |
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| T |
49005330 |
acttgccttgactaatttgttgatgatgatttgagc |
49005365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 38117328 - 38117443
Alignment:
| Q |
9 |
actttacttgaaaatatgtaatcatgagtcatgacatttggttaaaattgttggaggtatggtaatagtaatgacagataaatctatagcatcttagttt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||||| |||| || |
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| T |
38117328 |
actttacttgaaaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagctt |
38117427 |
T |
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| Q |
109 |
gaaggatggcatttca |
124 |
Q |
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| T |
38117428 |
gagggatggcatttca |
38117443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 38161156 - 38161270
Alignment:
| Q |
33 |
tgagtcatgacatttggttaaaattgttggaggtatggtaatagtaatgacagataaatctatagcatcttagtttgaaggatggcatttcagaaacagg |
132 |
Q |
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||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||| || |||||||||||||||| | |
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| T |
38161156 |
tgagtcatggcatttggttactcttgttggaggtagtgtaatagtaatgacagataaatctgtagcattttagtttgagggctggcatttcagaaacaag |
38161255 |
T |
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| Q |
133 |
accaatgtttcttga |
147 |
Q |
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| T |
38161256 |
accaatgtttcttga |
38161270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 38139555 - 38139673
Alignment:
| Q |
22 |
atatgtaatcatgagtcatgacatttggttaaaattgttggaggtatggtaatagtaatgacagataaatctatagcatcttagtttgaaggatggcatt |
121 |
Q |
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||||||| ||||||||||||||||||||| || ||||||| ||| |||||||||||| |||| |||||| |||| ||| ||| | ||| |||||| |
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| T |
38139555 |
atatgtactcatgagtcatgacatttggtgaatcttgttggtggtgtggtaatagtaaagaca--taaatccggtgcattttaattttagggacggcatt |
38139652 |
T |
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| Q |
122 |
tcagaaacaggaccaatgttt |
142 |
Q |
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| T |
38139653 |
tcagaaacaggaccaacgttt |
38139673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 38117499 - 38117557
Alignment:
| Q |
158 |
agatgcagcagtagtccaacctttttccccctaaatgttattcttttctgaacttgcct |
216 |
Q |
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|||||||| |||||||||||||||| ||||| |||||||||| |||| | ||||||||| |
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| T |
38117499 |
agatgcagtagtagtccaaccttttccccccaaaatgttattttttttttaacttgcct |
38117557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 38139792 - 38139828
Alignment:
| Q |
208 |
aacttgcctcgactaatttgttgatgatgatttgagc |
244 |
Q |
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| T |
38139792 |
aacttgccttgaccaatttgttgatgatgatttgagc |
38139828 |
T |
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