View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_9 (Length: 582)
Name: NF13975_low_9
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 262 - 488
Target Start/End: Original strand, 14691386 - 14691610
Alignment:
| Q |
262 |
aagaaatcgaagatttaattaacattaaggaattaccatttgaataggaataaaaaatttagtaacaaattcggaaaatggactcgtgttaatttccaat |
361 |
Q |
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| T |
14691386 |
aagaaatcgatgatttaattaatagtatggaattaccatttgaataggaataaaaaatttagtaacaaaatcggaagatgaactcgtgttaatttccaat |
14691485 |
T |
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| Q |
362 |
caatttatataaggttgaaatcaattaccattcctatactagagaagcaggagttttcatactgaagcattcttacattaatactagagggcagattgta |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| ||||||| ||||||||| |
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| T |
14691486 |
--atttatataaggttgaaatcaattaccattcctatactagagaagaacgagttttcatactgaagcatgtttacattaattctagaggacagattgta |
14691583 |
T |
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| Q |
462 |
gaccaattgtgccatgaatcatgctta |
488 |
Q |
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| T |
14691584 |
gaccaattgtgtcatgaatcatactta |
14691610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 230 - 484
Target Start/End: Original strand, 14683979 - 14684227
Alignment:
| Q |
230 |
ttcttaatacttgatcttatttatggtcacctaagaaatcgaagatttaattaacattaaggaattaccatttgaataggaataaaaaatttagtaacaa |
329 |
Q |
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|||||||| ||| ||||||||| ||| |||||||||||| | ||||||||||| ||||||||||||| |||| ||||||||| |||||| | |||| | |
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| T |
14683979 |
ttcttaatggttgttcttatttaaggttacctaagaaatcaatgatttaattaatattaaggaattactatttcaataggaattgaaaattcaataacca |
14684078 |
T |
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| Q |
330 |
attcggaaaatggactcgtgttaatttccaatcaatttatataaggttgaaatcaattaccattcctatactagagaagcaggagttttcatactgaagc |
429 |
Q |
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| T |
14684079 |
atttggaagatgaaatcacattaatttccaatcaatttatgtaaggttgaaatcaataaccattcctatcctag------aggagttttcatactcaagc |
14684172 |
T |
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| Q |
430 |
attcttacattaatactagagggcagattgtagaccaattgtgccatgaatcatg |
484 |
Q |
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| T |
14684173 |
attcatacatttaccctagaggacagattgtagaccaattgtgtcatgagtcatg |
14684227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 487 - 582
Target Start/End: Original strand, 14691660 - 14691756
Alignment:
| Q |
487 |
tatgagaatggttatttaaagtttaattagagaagagagggtgttagtgattattctcttgttcagcaataaa-cttagcgaagaaatacgttttgg |
582 |
Q |
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| T |
14691660 |
tatgataatggttatttaaaggttaattagagaagagagggtgttagtgattattctctagttcagcaataaagcatagcgaagaaatacattttgg |
14691756 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 28422987 - 28423076
Alignment:
| Q |
78 |
gtaatactgaaattacttcctgacaaaattaatatccaaactagtctctcagaattacatacatgtgacacattagtccctatgttagag |
167 |
Q |
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| T |
28422987 |
gtaatactcaaattacttcctgacaaaattaatatccaaattagtctctcacagttacatacaggtaacacattagtccctatgttagag |
28423076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 497 - 573
Target Start/End: Original strand, 14684303 - 14684379
Alignment:
| Q |
497 |
gttatttaaagtttaattagagaagagagggtgttagtgattattctcttgttcagcaataaacttagcgaagaaat |
573 |
Q |
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| T |
14684303 |
gttatttaaaggttaatgagagaagagagggtgttagtgattattctctttttcagcagtaagcttagggaagaaat |
14684379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 14691334 - 14691384
Alignment:
| Q |
78 |
gtaatactgaaattacttcctgacaaaattaatatccaaactagtctctca |
128 |
Q |
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| T |
14691334 |
gtaatactcaaattactttcggacaaaattaatatccaaattagtctctca |
14691384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 14680889 - 14680829
Alignment:
| Q |
109 |
atatccaaactagtctctcagaattacatacatgtgacacattagtccctatgttagagcc |
169 |
Q |
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| T |
14680889 |
atatccaaattagtctctcataattacatacaggttacacattattccgaatgttagagcc |
14680829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14691240 - 14691308
Alignment:
| Q |
1 |
tgtcttattgttccgatgttgcttgataaatagtctaaataccgaattagtcccgaacaaagtggacgc |
69 |
Q |
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| T |
14691240 |
tgtctcattgtttcgatgttgctttataaatagactgaataccgaattagttcgtaacaaattggacgc |
14691308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28422894 - 28422954
Alignment:
| Q |
1 |
tgtcttattgttccgatgttgcttgataaatagtctaaataccgaattagtcccgaacaaa |
61 |
Q |
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| T |
28422894 |
tgtcttattgttccgatgttgctttataaataaactaaatattgaattagcccctaacaaa |
28422954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 323 - 469
Target Start/End: Original strand, 2438459 - 2438605
Alignment:
| Q |
323 |
gtaacaaattcggaaaatggactcgtgttaatttccaatcaatttatataaggttgaaatcaattaccattcctatactagagaagcaggagttttcata |
422 |
Q |
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|||||||| || ||| ||| |||| |||||||||||||||||||| ||||||||||||||||| |||| ||||| | |||| ||||| ||||||||||| |
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| T |
2438459 |
gtaacaaactcagaatatgaactcatgttaatttccaatcaatttgcataaggttgaaatcaataaccactcctagattagaaaagcacgagttttcata |
2438558 |
T |
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| Q |
423 |
ctgaagcattcttacattaatactagagggcagattgtagaccaatt |
469 |
Q |
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| T |
2438559 |
ctccagcatccatacatcaaccctagaacacaaattgtagaccaatt |
2438605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 2438738 - 2438785
Alignment:
| Q |
506 |
agtttaattagagaagagagggtgttagtgattattctcttgttcagcaa |
555 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||| ||||||||||| |
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| T |
2438738 |
agtttaattagataagagagggtg--agtgattattctattgttcagcaa |
2438785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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