View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_95 (Length: 238)

Name: NF13975_low_95

Description: NF13975

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13975_low_95

[»] chr6 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 177; E-Value: 2e-95

Query Start/End: Original strand, 31 - 229

Target Start/End: Complemental strand, 11378678 - 11378481

Alignment:

Q	31	tttttgtatagagaaaagagtgaaagttatgttagaagagcaaacagtaa-gatggcaaatctaaatccaatcaatgaagaaaatgaaaaaagtgaggca	129	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	11378678	tttttgtatagagaaaagagtgaaagttatgttagaagagcaaacagtaaagatggcaaatctaaatccaatcaatgaagaaaatgaaaa--gtgaggca	11378581	T

Q	130	gcgagaaaaagagaaacgaaccctagatagattggtgaatgaatttcctcactccactgctccgtttttatagcactggtttcgttgaagagtgatgatg	229	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11378580	gcgagaaaaagagaaacgaaccctagatagattggtgaatgaatttcctcactccactgctccgtttttatagcactggtttggttgaagagtgatgatg	11378481	T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 47; E-Value: 6e-18

Query Start/End: Original strand, 137 - 227

Target Start/End: Original strand, 2580995 - 2581085

Alignment:

Q	137	aaagagaaacgaaccctagatagattggtgaatgaatttcctcactccactgctccgtttttatagcactggtttcgttgaagagtgatga	227	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2580995	aaagagagacgaaccctagatagatttgttaatgaaattctgcactccaaagctccttttttatagcactggttcggttgaagagtgatga	2581085	T

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