View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_99 (Length: 236)

Name: NF13975_low_99
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_low_99
NF13975_low_99
[»] chr8 (4 HSPs)
chr8 (18-219)||(39087538-39087738)
chr8 (140-215)||(8361216-8361291)
chr8 (140-215)||(25091397-25091472)
chr8 (149-213)||(4931099-4931162)
[»] scaffold0229 (1 HSPs)
scaffold0229 (140-215)||(25493-25568)
[»] chr7 (3 HSPs)
chr7 (140-215)||(12976995-12977070)
chr7 (140-215)||(12982453-12982528)
chr7 (140-215)||(18293104-18293179)
[»] chr6 (3 HSPs)
chr6 (140-215)||(4849804-4849879)
chr6 (146-213)||(15873527-15873594)
chr6 (146-200)||(21057853-21057907)
[»] chr4 (2 HSPs)
chr4 (146-213)||(13915871-13915938)
chr4 (140-215)||(14249866-14249941)
[»] chr1 (1 HSPs)
chr1 (140-215)||(1365185-1365260)
[»] chr3 (2 HSPs)
chr3 (140-215)||(38357066-38357141)
chr3 (146-213)||(35684505-35684572)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 39087738 - 39087538
Alignment:
Q  18 agagaaggcagataaaccacaatcaacttcgggcagcataaaatctgaggcagcacaaaaggtagggaatcaatcgtccagttcaaagagcacacccatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087738 agagaaggcagataaaccacaatcaacttcgggcagcataaaatctgaggcagcacaaaaggtagggaatcaatcgtccagttcaaagagcacacccatc 39087639  T
Q  118 tcaaataagccagccaggaagcgcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatcttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087638 tcaaataagccagccaggaagcgcattacacctattgcaattgatccatga-ttttcaatgccagagaagttccattaacgtccgcccgtgtacatcttt 39087540  T
Q  218 tt 219  Q
    ||    
T  39087539 tt 39087538  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 8361291 - 8361216
Alignment:
Q  140 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 215  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  8361291 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 8361216  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 25091472 - 25091397
Alignment:
Q  140 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 215  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  25091472 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 25091397  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 4931162 - 4931099
Alignment:
Q  149 ctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 213  Q
    |||||||||||| || ||||| ||||||| ||| |||| ||||||||||||| ||| ||||||||    
T  4931162 ctattgcaattggtc-atgatatttcaataccatagaaattccattaacgtcagcctgtgtacat 4931099  T

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Target: scaffold0229 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 25493 - 25568
Alignment:
Q  140 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 215  Q
    ||||| ||||||||||||||| || ||||| ||||||||| |||||| || |||||||||| ||| ||||||||||    
T  25493 gcattgcacctattgcaattggtcaatgatatttcaatgcaagagaaatttcattaacgtcagcctgtgtacatct 25568  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 12976995 - 12977070
Alignment:
Q  140 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 215  Q
    ||||| ||||||||||||||| || ||||| ||||||||||| |||| ||||| ||||||| ||| ||||||||||    
T  12976995 gcattgcacctattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcagcctgtgtacatct 12977070  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 12982453 - 12982528
Alignment:
Q  140 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 215  Q
    ||||| ||||||||||||||| || ||||| ||||||||||| |||| ||||| ||||||| ||| ||||||||||    
T  12982453 gcattgcacctattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcagcctgtgtacatct 12982528  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 18293179 - 18293104
Alignment:
Q  140 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 215  Q
    ||||| |||| |||||||||| || ||||| ||||||||||| |||| ||||| |||||||  || ||||||||||    
T  18293179 gcattgcacccattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcatcctgtgtacatct 18293104  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 4849804 - 4849879
Alignment:
Q  140 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 215  Q
    ||||| ||||||||||||||| || ||||| ||||||||||| |||| ||||| ||||||| ||| ||||||||||    
T  4849804 gcattgcacctattgcaattggtcaatgatatttcaatgccatagaaattccactaacgtcagcctgtgtacatct 4849879  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 15873527 - 15873594
Alignment:
Q  146 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 213  Q
    ||||||||||||||| || ||||| ||||||||||| | || ||||||||||||| ||| ||||||||    
T  15873527 cacctattgcaattggtcaatgatatttcaatgccataaaaattccattaacgtcagcctgtgtacat 15873594  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 21057907 - 21057853
Alignment:
Q  146 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtc 200  Q
    ||||||||||||||| || ||||| ||||||||||| |||| |||||||||||||    
T  21057907 cacctattgcaattggtcaatgatatttcaatgccatagaaattccattaacgtc 21057853  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 13915871 - 13915938
Alignment:
Q  146 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 213  Q
    ||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||| ||| ||||||||    
T  13915871 cacctattgcaattggtcaatgatatttcaatgccatagaaattccattaacgtcagcctgtgtacat 13915938  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 14249866 - 14249941
Alignment:
Q  140 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 215  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  14249866 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 14249941  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 1365260 - 1365185
Alignment:
Q  140 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 215  Q
    ||||| ||||||||||||||| || ||||| ||||||||| |||||| || |||||||||| ||| ||||||||||    
T  1365260 gcattgcacctattgcaattggtcaatgatatttcaatgcaagagaaatttcattaacgtcagcctgtgtacatct 1365185  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 38357141 - 38357066
Alignment:
Q  140 gcattacacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacatct 215  Q
    ||||| ||||||||||||||| || || || ||||||||||| |||| ||||||||||||| ||  ||||||||||    
T  38357141 gcattgcacctattgcaattggtcaattatatttcaatgccatagaaattccattaacgtcagcttgtgtacatct 38357066  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 35684505 - 35684572
Alignment:
Q  146 cacctattgcaattgatccatgatttttcaatgccagagaagttccattaacgtccgcccgtgtacat 213  Q
    ||||||||||||||| || ||||| ||||||| ||| |||| ||||||||||||| ||  ||||||||    
T  35684505 cacctattgcaattggtcaatgatatttcaataccatagaaattccattaacgtcagcatgtgtacat 35684572  T

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