View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13976_low_2 (Length: 286)
Name: NF13976_low_2
Description: NF13976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13976_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 19796513 - 19796762
Alignment:
| Q |
12 |
accgcgaacaccacggaggttacagacgagtttgagagtggtgagtgggttgtgtgaccaagctagtttgagcctctcaacgagtgcttcagagggagta |
111 |
Q |
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| T |
19796513 |
accgcggacgccacggaggttacagacgagtttgagggcggtgagagggttttgggaccaagcaagtttgagtctctcaacgagtgtttcagaaggagta |
19796612 |
T |
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| Q |
112 |
tcgggaacaacgtggaagaagaaatcgaggcaagggttaccggtgtagagaaatgttggtgacatgttttcggtaaaccccattggtgggtttcggttag |
211 |
Q |
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| T |
19796613 |
tcaggaacaacatggaagaagaaatcgaggcaagggttaccggtggagagaaacgttggtgacatgttctctgtcaaccccatcggtgggtttcggtttc |
19796712 |
T |
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| Q |
212 |
ttgcaagagaattgaagttggcgaccatttgatcgacgaagacatcgtta |
261 |
Q |
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| T |
19796713 |
taccaagagaattgaagttggcgaccatttgatcgaggaagacatcgtta |
19796762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 15835755 - 15836000
Alignment:
| Q |
16 |
cgaacaccacggaggttacagacgagtttgagagtggtgagtgggttgtgtgaccaagctagtttgagcctctcaacgagtgcttcagagggagtatcgg |
115 |
Q |
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| T |
15835755 |
cgaacaccacggaggttacagacgagtttgagggtggtgagtgggttatgggaccatgctagtttgagtctctcgacaagtgtttcagagggagtatcgg |
15835854 |
T |
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| Q |
116 |
gaacaacgtggaagaagaaatcgaggcaagggttaccggtgtagagaaatgttggtgacatgttttcggtaaaccccattggtgggtttcggttagttgc |
215 |
Q |
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| T |
15835855 |
ggacaacatggaagaagaaatcaaggcatgggttaccggtggagagaaatgtcggtgacatgttctcggtgaaccccatcagtgggtttcggttacttgc |
15835954 |
T |
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| Q |
216 |
aagagaattgaagttggcgaccatttgatcgacgaagacatcgtta |
261 |
Q |
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| T |
15835955 |
cagagaattgaagttgtccaccatttgatcgacaaagacattgtta |
15836000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 47713565 - 47713615
Alignment:
| Q |
12 |
accgcgaacaccacggaggttacagacgagtttgagagtggtgagtgggtt |
62 |
Q |
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| T |
47713565 |
accgcgaacgccgcggaggttacagacgagtttaagggtggtgagtgggtt |
47713615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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