View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13977_low_3 (Length: 448)
Name: NF13977_low_3
Description: NF13977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13977_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 55759553 - 55759827
Alignment:
| Q |
1 |
acgaaaacgaaataaacgatgttatcgtaaagatgaaaaatgcctaaaacctgaaatggaacgaaggaagattcatcagcatcatgaacaagcattcatg |
100 |
Q |
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| T |
55759553 |
acgaaaacgaaataaacgatgttaccgtaaagatgaaaaatgcctaaaacctgaaatggaacgaaggaagattcatcagcatcatgaacaagcattcat- |
55759651 |
T |
|
| Q |
101 |
aaaacgaaataatgatgatgaatgttaccgtaaagattcatcatcatcaataaggagtcatgaaaacgaaaagcaaatagcgataatgaatgttaccaga |
200 |
Q |
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| T |
55759652 |
aaaacgaaataatgatgatgaatgttaccgtaaagattcatcatcatcaataaggagtcatgaaaacgaaaagcaaatagcgataatgaatgttaccaga |
55759751 |
T |
|
| Q |
201 |
aaatgaaaacacttaaaccgtttcttggatgagagaaagcaatgcttgaaaggtttcacgatgaatgttgaagaaga |
277 |
Q |
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| T |
55759752 |
aaatgaaaacactgaaaccgtttcttggatgagagaaagcaatgcttg-aaggtttcacgatgaatgttgaagaaga |
55759827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 55759942 - 55760058
Alignment:
| Q |
315 |
ttgattcatcaagcataagattaaatttcataaaattaatagttataagatgtatatgtgatatgatttaagtgaaaagaaggaagaaatattgagggaa |
414 |
Q |
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| T |
55759942 |
ttgattcatcaagcataagattaaatttcataaaattaatagttataagatgtatatgtgatatgatttaagtgaaaagaaggaagaaatattgagggaa |
55760041 |
T |
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| Q |
415 |
aaaacaataaatgaaat |
431 |
Q |
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| T |
55760042 |
aaaacaataaatgaaat |
55760058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 55759437 - 55759552
Alignment:
| Q |
1 |
acgaaaacgaaataaacgatgttatcgtaaagatgaaaaatgcctaaaacctgaaatggaacgaaggaagattcatcagcatcatgaacaagcattcatg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55759437 |
acgaaaacgaaataaacgatgttaccgtaaagatgaaaaatgcctaagacctgaaatcgaacgaaggaagattcatcagcatcatgaacaagcattcatg |
55759536 |
T |
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| Q |
101 |
aaaacgaaataatgat |
116 |
Q |
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|||||||||||||||| |
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| T |
55759537 |
aaaacgaaataatgat |
55759552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 38940125 - 38939923
Alignment:
| Q |
1 |
acgaaaacgaaataaacgatgttatcgtaaagatgaaaaatgcctaaaacctgaaatggaacgaaggaagattcatc---agcatcatgaacaagcattc |
97 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||||| ||||| |
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| T |
38940125 |
acgaaaacgaaataaacgatgttaccgtaaagatgaaaaattcctaaaacctgaaacggaacgaagaaagattcatcagcagcatcataaacaa------ |
38940032 |
T |
|
| Q |
98 |
atgaaaacgaaataatgatgatgaatgttaccgtaaagattcatcatcatcaataaggagtca-tgaaaacgaaaa-gcaaatagcgataatgaatgtta |
195 |
Q |
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| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| |||||||| |
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| T |
38940031 |
aagaaaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaatgtta |
38939932 |
T |
|
| Q |
196 |
ccagaaaat |
204 |
Q |
| |
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|| |||||| |
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| T |
38939931 |
cctgaaaat |
38939923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 292 - 431
Target Start/End: Complemental strand, 38939723 - 38939588
Alignment:
| Q |
292 |
ttggccttgtagtattattcattttgattcatcaagcataagattaaa-tttcataaaattaatagttataagatgtatatgtgatatgatttaagtgaa |
390 |
Q |
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||||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||| ||| ||||||||||||| ||||| ||||||||||||| |
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| T |
38939723 |
ttggccttgtagtattattcattttgaatagt-aagcataagattaaaatttcataaaatttata-ttataagatgtat--gtgatttgatttaagtgaa |
38939628 |
T |
|
| Q |
391 |
aagaaggaagaaatattgagggaaaaaacaataaatgaaat |
431 |
Q |
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| T |
38939627 |
a-gaaggaagagatactgagggaaaaaacaataaatgaaat |
38939588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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