View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13977_low_4 (Length: 448)
Name: NF13977_low_4
Description: NF13977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13977_low_4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 33618719 - 33618295
Alignment:
| Q |
16 |
atgacgcaatgatgttaaacaacttaaaaatatatttcatagggacacaaaatatattagctaacaaaaggatagataggtttagttcgcttaccaagca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33618719 |
atgacgcaatgatgttaaacaacttaaaaatatatttcatagggacacaaaatatattaactaacaaaaagatagataggtttagttcgcttaccaagca |
33618620 |
T |
|
| Q |
116 |
gacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatcca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618619 |
gacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatcca |
33618520 |
T |
|
| Q |
216 |
agtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgtt |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33618519 |
agtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatattgatccctgtaagctgtt |
33618420 |
T |
|
| Q |
316 |
ggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618419 |
ggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgt |
33618320 |
T |
|
| Q |
416 |
ccacttgataagttcttctcactcg |
440 |
Q |
| |
|
||||||||||||||||||| ||||| |
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|
| T |
33618319 |
ccacttgataagttcttctaactcg |
33618295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 101 - 439
Target Start/End: Complemental strand, 33609459 - 33609121
Alignment:
| Q |
101 |
ttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| | |
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|
| T |
33609459 |
ttcgcttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagagataacgttagacaca |
33609360 |
T |
|
| Q |
201 |
aggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttga |
300 |
Q |
| |
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|||||||| |||||||||| ||||||||||| |||||| ||||| |||| || |||||||| || |||||||| |||||||| || || || ||||||| |
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| T |
33609359 |
aggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacgatgttga |
33609260 |
T |
|
| Q |
301 |
tccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactga |
400 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || || |
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|
| T |
33609259 |
tcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatactccctttttaatatggttttaaagggctcttggttaaccga |
33609160 |
T |
|
| Q |
401 |
tttcgcaatttctgtccacttgataagttcttctcactc |
439 |
Q |
| |
|
||| |||| |||| | |||| |||||||||||| |||| |
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|
| T |
33609159 |
ttttgcaagttctattgacttaataagttcttctaactc |
33609121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 99 - 439
Target Start/End: Complemental strand, 33627851 - 33627511
Alignment:
| Q |
99 |
agttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagaca |
198 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||| |||||||| || | || ||||| ||| |||| |
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|
| T |
33627851 |
agttcacttaccaagcagacaaacatgataatacccccagtaatgaacaagaatcttcgaccaaatcgatcaataacagtagaagagacgaggatagatg |
33627752 |
T |
|
| Q |
199 |
aaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgtt |
298 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||||| | | |||||| || |||| ||| ||||||||| |||||||| || || | |||||| |
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|
| T |
33627751 |
caaggttaacaacgccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgtt |
33627652 |
T |
|
| Q |
299 |
gatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcact |
398 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | |
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|
| T |
33627651 |
gatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgcagt |
33627552 |
T |
|
| Q |
399 |
gatttcgcaatttctgtccacttgataagttcttctcactc |
439 |
Q |
| |
|
||||| ||||||| ||| || | |||||||||||| |||| |
|
|
| T |
33627551 |
gattttgcaatttttgttgacctaataagttcttctaactc |
33627511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 212 - 440
Target Start/End: Complemental strand, 33588632 - 33588404
Alignment:
| Q |
212 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
311 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33588632 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33588533 |
T |
|
| Q |
312 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
411 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | ||||||||| |||| |||||||||||||||| ||||| ||||| |
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|
| T |
33588532 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctctaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33588433 |
T |
|
| Q |
412 |
ctgtccacttgataagttcttctcactcg |
440 |
Q |
| |
|
|||||||||| | ||||||||| ||||| |
|
|
| T |
33588432 |
ctgtccacttaaagagttcttctaactcg |
33588404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 212 - 440
Target Start/End: Complemental strand, 33595804 - 33595576
Alignment:
| Q |
212 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
311 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33595804 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33595705 |
T |
|
| Q |
312 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
411 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
33595704 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33595605 |
T |
|
| Q |
412 |
ctgtccacttgataagttcttctcactcg |
440 |
Q |
| |
|
|||||||||| | ||||||||| ||||| |
|
|
| T |
33595604 |
ctgtccacttaaagagttcttctaactcg |
33595576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 212 - 440
Target Start/End: Complemental strand, 33602935 - 33602707
Alignment:
| Q |
212 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
311 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33602935 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33602836 |
T |
|
| Q |
312 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
411 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
33602835 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33602736 |
T |
|
| Q |
412 |
ctgtccacttgataagttcttctcactcg |
440 |
Q |
| |
|
|||||||||| | ||||||||| ||||| |
|
|
| T |
33602735 |
ctgtccacttaaagagttcttctaactcg |
33602707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 433
Target Start/End: Complemental strand, 33622658 - 33622491
Alignment:
| Q |
266 |
aaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctt |
365 |
Q |
| |
|
||||||||| |||||||| || || ||||||||| ||||||||| |||| |||| ||| |||||| || ||||| | | |||||| |||| || ||| |
|
|
| T |
33622658 |
aaagaggttaggtgaatagaaagcaacaatgttgttccctgtaacatgttcgaaacacgagattgctaaggccattaaaatctgaggttgatactctctt |
33622559 |
T |
|
| Q |
366 |
tttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagttcttc |
433 |
Q |
| |
|
|||| ||||||||||||||| |||| || |||||||| |||||| ||| |||| ||| ||||||| |
|
|
| T |
33622558 |
tttagtatggttttaaagggatctttttttactgattttacaatttgtgttgacttaatatgttcttc |
33622491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 33622824 - 33622738
Alignment:
| Q |
105 |
cttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataagg |
191 |
Q |
| |
|
||||| |||||||||| |||||||| ||||| | ||||||||||||||||||||||| || ||||| || || || ||||||||| |
|
|
| T |
33622824 |
cttacaaagcagacaaacatcataacacccccggttatgaacaagaatcttcgaccaaatctatcaataacactagaggagataagg |
33622738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 33563045 - 33562979
Alignment:
| Q |
294 |
atgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatatt |
360 |
Q |
| |
|
||||||||||| || || ||||| |||| ||| || |||| ||| |||||||||||||||||||||| |
|
|
| T |
33563045 |
atgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatatt |
33562979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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