View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_high_1 (Length: 632)
Name: NF13978_high_1
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 19 - 622
Target Start/End: Original strand, 792184 - 792787
Alignment:
| Q |
19 |
agatgtgatgtggcatgcgtgatttataaagtatttggcttcttctccaaattaaggacaaagataaaataatttttctcatttgaaatagcccatatac |
118 |
Q |
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| T |
792184 |
agatgtgatgtggcatgcgtgatttataaagtatttggcttcttctccaaattaaggacaaagataaaataatttttctcatttgaaatagcccatatac |
792283 |
T |
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| Q |
119 |
caaccctatcatagccttaattcccaccaatcacttggcttaagaattcacaagaaagagacttagggttatcattctaatatatgtacttaaaatctcc |
218 |
Q |
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| T |
792284 |
caaccctatcatagccttaattcccaccaatcacttggcttaagaattcacaagaaagagacttagggttatcattctaatatatgtacttaaaatctcc |
792383 |
T |
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| Q |
219 |
ttgttttacttgattattatggtcaggactattcactatgaaataatgagaaaagaacgaatattcttttatgaaaagatggatggtaaaataattgtga |
318 |
Q |
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| T |
792384 |
ttgttttacttgattattatggtcaggcctattcactatgaaataatgagaaaagaacgaatattcttttatgaaaagatggatggtaaaataattgtga |
792483 |
T |
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| Q |
319 |
atactttaattaacaagtggaaattaaattgtatataagatccagtggcttgcaaagatccaaatcaatatgattgaaaccaagactgaaaatccaacgc |
418 |
Q |
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| T |
792484 |
atactttaattaacaagtggaaattaaattgtatatgagatccagtggcttgcaaagatccaaatcaatatgattgaaaccaagactgaaaatccaacgc |
792583 |
T |
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| Q |
419 |
acattttaatttattttgtggacttcatgtaacttggagatattaatttatatgtacaaatttttaaaatgacactctcatttaatcatggtaaaataat |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
792584 |
acattttaatttattttgtggacttcatgtaacttggagatattaatttctatgtacaaatttttaaaatgacactctcatttaatcatggtaaaataat |
792683 |
T |
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| Q |
519 |
gtgtttcgcaattagcttactttttaatgtgtgttgtactagcattggcccgtgatgagttttattttttgggccgtattggctttattgtaaatgttgt |
618 |
Q |
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| T |
792684 |
gtgtttctcaattagtttactttttaatgtgtgttgtactagcattggcccgtgatgagttttattttttgggtcgtattggctttattgtaaatgttgt |
792783 |
T |
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| Q |
619 |
tcat |
622 |
Q |
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| T |
792784 |
tcat |
792787 |
T |
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