View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13978_high_10 (Length: 421)
Name: NF13978_high_10
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 3375072 - 3375215
Alignment:
| Q |
24 |
ggcttttcaaatatgaatattcatctctctcaatatacaatatgaatattcatcgataaacaactctaccaattcaaaaagtttaccaccgtcttcaagt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3375072 |
ggcttttcaaatatgaatattcatctctctcaatatacaatatgaatattcatcgataaacaactctaccaattcaaaaagtttaccaccgtcttcaagt |
3375171 |
T |
|
| Q |
124 |
cgaatatgtgtatctccattgatgttccaaaaccttatttcaca |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3375172 |
cgaatatgtgtatctccattgatgttccaaaaccttatttcaca |
3375215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 3400118 - 3400261
Alignment:
| Q |
24 |
ggcttttcaaatatgaatattcatctctctcaatatacaatatgaatattcatcgataaacaactctaccaattcaaaaagtttaccaccgtcttcaagt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3400118 |
ggcttttcaaatatgaatattcatctctctcaatatacaatatgaatattcatcgttaaaaaactctaccaattcaaaaagtttaccaccgtcttcaagt |
3400217 |
T |
|
| Q |
124 |
cgaatatgtgtatctccattgatgttccaaaaccttatttcaca |
167 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
3400218 |
cgaatatgtgtatctccattgatgttccacaaacttatttcaca |
3400261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 3374958 - 3374868
Alignment:
| Q |
272 |
gacctaaaacggttgctttgatgacctcacccttggatcaaccccgaataaaacatgctttaacaaacatttttcaatacttactctttta |
362 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3374958 |
gacctaaaacggttgctttgatgaccttacccttggatcaaccctgaacaaaacatgctttaacaaacatttttcaatacttactctttta |
3374868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 3375051 - 3375004
Alignment:
| Q |
179 |
attatggtaaagaaaacaatttggtaccatgaagttttgagggcaaac |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3375051 |
attatggtaaagaaaacaatttggtaccatgaagttttgagggcaaac |
3375004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 3400083 - 3400045
Alignment:
| Q |
179 |
attatggtaaagaaaacaatttggtaccatgaagttttg |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3400083 |
attatggcaaagaaaacaatttggtaccatgaagttttg |
3400045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 3395635 - 3395676
Alignment:
| Q |
82 |
aacaactctaccaattcaaaaagtttaccaccgtcttcaagt |
123 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
3395635 |
aacaactctgccaattcaaaaagttcaccaccgtcttcaagt |
3395676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 3370011 - 3370052
Alignment:
| Q |
82 |
aacaactctaccaattcaaaaagtttaccaccgtcttcaagt |
123 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
3370011 |
aacaactctgccagttcaaaaagttcaccaccgtcttcaagt |
3370052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University