View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13978_high_13 (Length: 400)
Name: NF13978_high_13
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 10814990 - 10814629
Alignment:
| Q |
16 |
acaataatcagtaatcgtatttatctcattgttttctcattgccccttgtaatagataacgcgttatgataaaaattcctctattatttaaatattgcac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10814990 |
acaataatcagtaatcgtatttatctcattgttttctcattgccccttgtaatagataacgcgttatgataaaagttcctctattatttaaatattgcac |
10814891 |
T |
|
| Q |
116 |
cggtttaatcaaatatatgtataatcatacacaattaattgttatgaaaataggctcatgtatgctattctttttnnnnnnnnnnnnnnnnnnnnncata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10814890 |
cggtttaatcaaatatatgtataatcatacacaattaattgttatgaaaataggctcatgtatgctattcttttt-------ttaaaaaaaaaaaacata |
10814798 |
T |
|
| Q |
216 |
ataacattcatttcttaaatcggtgttga---------agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10814797 |
ataacattcatttcttaaatcggtgttgaagagatttcagagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatt |
10814698 |
T |
|
| Q |
307 |
tcccattatatgtgctttattagcttaagaaggaacattggacttagattttccatatatccagttttt |
375 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10814697 |
tcccattatatgtgctttattagcttgagaaggaacattggacttagactttccatatatccagttttt |
10814629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 245 - 366
Target Start/End: Complemental strand, 19806681 - 19806560
Alignment:
| Q |
245 |
agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
344 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19806681 |
agagaaacatgtttattcaaaattgattctttatggatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
19806582 |
T |
|
| Q |
345 |
tggacttagattttccatatat |
366 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19806581 |
tggacttagattttccatatat |
19806560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 19806784 - 19806688
Alignment:
| Q |
80 |
tatgataaaaattcctctattatttaaatattgcaccggtttaatcaaatatatgtataatcatacacaattaattgttatgaaaataggctcatgt |
176 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
19806784 |
tatgataaaagttcctctattatttaaatattgcaccggtttaatcaaatatatgtctaatcatacacaatcaactgttatgaaaatagactcatgt |
19806688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 245 - 374
Target Start/End: Complemental strand, 19575546 - 19575417
Alignment:
| Q |
245 |
agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
344 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19575546 |
agagaaacatgtttgttcaaaatggattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttgagaaggaacat |
19575447 |
T |
|
| Q |
345 |
tggacttagattttccatatatccagtttt |
374 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
19575446 |
tggacttagatttttcatatatccagtttt |
19575417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 19575696 - 19575592
Alignment:
| Q |
80 |
tatgataaaaattcctctattatttaaatattgcaccggtttaatcaaatatatgtataatcatacacaattaattgttatgaaaataggctcatgtatg |
179 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
19575696 |
tatgataaaagttcctctattatttaaatattgcactggtttaatcaaatatatatatattcatacacaattaagtgttatgaaaataggctcatatatg |
19575597 |
T |
|
| Q |
180 |
ctatt |
184 |
Q |
| |
|
||||| |
|
|
| T |
19575596 |
ctatt |
19575592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 245 - 374
Target Start/End: Original strand, 14368010 - 14368139
Alignment:
| Q |
245 |
agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
344 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14368010 |
agagaaacatgtttgttcaaaatggattctttctgcatttctagtactgattttgagtaatttcccattatatgtgctttattagcttgagaaggaacat |
14368109 |
T |
|
| Q |
345 |
tggacttagattttccatatatccagtttt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
14368110 |
tggacttagattttccatatatccagtttt |
14368139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 245 - 376
Target Start/End: Original strand, 18975004 - 18975135
Alignment:
| Q |
245 |
agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
344 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18975004 |
agagaaacatgtttattcaaaattgattctttatggatttctagtactggttttgagtaatttcccattatatgtgctttattagcttgagaaggaacat |
18975103 |
T |
|
| Q |
345 |
tggacttagattttccatatatccagtttttg |
376 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| |
|
|
| T |
18975104 |
tggacttagattttccatatattcagattttg |
18975135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 14367855 - 14367964
Alignment:
| Q |
80 |
tatgataaaaattcctctattatttaaatattgcaccggtttaatcaaatatatgtataatcatacacaattaattgttatgaaaataggctcatgtatg |
179 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14367855 |
tatgataaaagttcctctatcatttaaatattgcaccggtttaatcaaatatatgtatattcatacacaattaagtgttatgaaaataggctcatgtatg |
14367954 |
T |
|
| Q |
180 |
ctattctttt |
189 |
Q |
| |
|
|||||||||| |
|
|
| T |
14367955 |
ctattctttt |
14367964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 18974901 - 18974997
Alignment:
| Q |
80 |
tatgataaaaattcctctattatttaaatattgcaccggtttaatcaaatatatgtataatcatacacaattaattgttatgaaaataggctcatgt |
176 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
18974901 |
tatgataaaagttcctctattatttaaatattgcaccggtttaatcaaatatatgtataatcatacacaatcaactgttatgaaaatagactcatgt |
18974997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 245 - 376
Target Start/End: Complemental strand, 5330870 - 5330739
Alignment:
| Q |
245 |
agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
344 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5330870 |
agagaaacatgtttattcaaaattgattctttatggatttctagtactggttttgagtaatttcccattatatgtgctttattagcttgagaaggaacat |
5330771 |
T |
|
| Q |
345 |
tggacttagattttccatatatccagtttttg |
376 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| |
|
|
| T |
5330770 |
tggacttagattttccatatattcagattttg |
5330739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 5330973 - 5330877
Alignment:
| Q |
80 |
tatgataaaaattcctctattatttaaatattgcaccggtttaatcaaatatatgtataatcatacacaattaattgttatgaaaataggctcatgt |
176 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
5330973 |
tatgataaaagttcctctattatttaaatattgcaccggtttaatcaaatatatgtataatcatacacaatcaactgttatgaaaatagactcatgt |
5330877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 13309951 - 13309894
Alignment:
| Q |
16 |
acaataatcagtaatcgtatttatctcattgttttctcattgccccttgtaatagata |
73 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13309951 |
acaataaccagtaatcgtatttatctcattgttttctcattgccccttgaaatagata |
13309894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 12690197 - 12690230
Alignment:
| Q |
135 |
tataatcatacacaattaattgttatgaaaatag |
168 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
12690197 |
tataatcatacacaattaattgttatgagaatag |
12690230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University