View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_high_17 (Length: 371)
Name: NF13978_high_17
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 43855897 - 43856243
Alignment:
| Q |
14 |
catctacaacaaacaggtcttgaaggtttaccatttaccagtaactctcactgcttttcaatttgctattggcacactccttgtagcattcatgtggggt |
113 |
Q |
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| T |
43855897 |
catctacaacaaacaggtcttgaaggtttaccatttaccagtaactctcactgcttttcaatttgctattggcacactccttgtagcattcatgtggggt |
43855996 |
T |
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| Q |
114 |
cttaatctttataaaaggccaaaactcacttcttcacaggtacttattttaatccttgttatatttttactgttctatttgttctgttttgtaatattaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43855997 |
cttaatctttataaaaggccaaaactcacttcttcacaggtacttattttaatccttgttatatttttactgttctatttgttctgttttgtaatattaa |
43856096 |
T |
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| Q |
214 |
tggttctgttatttctctgattttgcagcttttagcaatatttcctttggctttggtacatacattagggaaccttttcactaacatgagtcttggaaag |
313 |
Q |
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| T |
43856097 |
tggttctgttatttctctgattttgcagcttttagcaatatttcctttggctttggtacatacattagggaatcttttcactaacatgagtcttggaaag |
43856196 |
T |
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| Q |
314 |
gttgctgtctcttttactcatactgttaaatcaatggagcctttctt |
360 |
Q |
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| T |
43856197 |
gttgctgtctcttttactcatactgttaaatcaatggagcctttctt |
43856243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 780307 - 780396
Alignment:
| Q |
272 |
catacattagggaaccttttcactaacatgagtcttggaaaggttgctgtctcttttactcatactgttaaatcaatggagcctttcttc |
361 |
Q |
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| T |
780307 |
catacattagggaaccttttgacgaacattagtcttggcaaggttgccgtatctttcactcacaccatcaaatctatggaacctttcttc |
780396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 34909985 - 34910098
Alignment:
| Q |
247 |
agcaatatttcctttggctttggtacatacattagggaaccttttcactaacatgagtcttggaaaggttgctgtctcttttactcatactgttaaatca |
346 |
Q |
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| T |
34909985 |
agcaatatttccactcgctatcgtgcatactttggggaatcttttcaccaatatgagtcttggaaaggtggctgtgtcatttactcacacaattaaagct |
34910084 |
T |
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| Q |
347 |
atggagcctttctt |
360 |
Q |
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|||||||||||||| |
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| T |
34910085 |
atggagcctttctt |
34910098 |
T |
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