View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_high_20 (Length: 346)
Name: NF13978_high_20
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 31066045 - 31066377
Alignment:
| Q |
1 |
tttgggttttctgcatatatattgaaaatatcttgtagtgaggtttaaaaattaaaacatttagatagatctacaaaatttgtttttctgacttgcaagt |
100 |
Q |
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| T |
31066045 |
tttgggttttctgcatatatattgaaaatatcttgtagtgaggtttaaaaattaaaacatttagatagatctacaaaatttgtttttctgacttgcaagt |
31066144 |
T |
|
| Q |
101 |
tgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcctctttactgtgaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31066145 |
tgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcctctttactgtgaatga |
31066244 |
T |
|
| Q |
201 |
tcagtatataatagttaatcaatc-----aatttcctctaaagaaaagcttgagctgaatattgtagcagttattatatataccttcctacgattgaacc |
295 |
Q |
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| T |
31066245 |
tcagtatacaatagttaatcaatcaatttaatttcctctaaagaaaagcttgagctgaatattgtagcagttattatatataccttcctacgattgaacc |
31066344 |
T |
|
| Q |
296 |
cagtaaatcataatgagaagatgtagcagtttc |
328 |
Q |
| |
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| T |
31066345 |
cagtaaatcataatgagaagatgtagcagtttc |
31066377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 85 - 328
Target Start/End: Original strand, 31054585 - 31054837
Alignment:
| Q |
85 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcc |
184 |
Q |
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|||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| |||||| | | |
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| T |
31054585 |
tttccgacttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaataaattattgctttttttgcattc |
31054684 |
T |
|
| Q |
185 |
tctttactgtgaatgatcagtatataatagttaatcaatcaatttcctctaaagaaaagcttgagctgaatattgtagcag---------ttattatata |
275 |
Q |
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|| || ||||||||||||| |||||| ||||||||||||||||||| |||||||||||| | || ||||||||| | ||||| ||| |
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| T |
31054685 |
tccttgctgtgaatgatcaatatatattagttaatcaatcaatttcttctaaagaaaagatcaagtaaaatattgtaatggttcattttcttattgtatg |
31054784 |
T |
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| Q |
276 |
taccttcctacgattgaacccagtaaatcataatgagaagatgtagcagtttc |
328 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31054785 |
taccttcccatgattgaacccagtaaatcataatgagaagatgtagcagtttc |
31054837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 31149816 - 31149995
Alignment:
| Q |
85 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcc |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| |
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| T |
31149816 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagtatagctgcaaagccattaatctgtttattatatgaataaattattgcctcttctgcctcc |
31149915 |
T |
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| Q |
185 |
tctttactgtgaatgatca------gtatataatagttaatcaatcaatttcctctaaagaaaagcttgagctgaatatt |
258 |
Q |
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|| | ||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||| ||||||||||| |
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| T |
31149916 |
tcgtggctgtgaatgatcaatatatatatatattagttaatcgatcaatttcctctatagaaaagcttaagctgaatatt |
31149995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 31168108 - 31168287
Alignment:
| Q |
85 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcc |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| |
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| T |
31168108 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagtatagctgcaaagccattaatctgtttattatatgaataaattattgcctcttctgcctcc |
31168207 |
T |
|
| Q |
185 |
tctttactgtgaatgatca------gtatataatagttaatcaatcaatttcctctaaagaaaagcttgagctgaatatt |
258 |
Q |
| |
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|| | ||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||| ||||||||||| |
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| T |
31168208 |
tcgtggctgtgaatgatcaatatatatatatattagttaatcgatcaatttcctctatagaaaagcttaagctgaatatt |
31168287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 31113381 - 31113509
Alignment:
| Q |
91 |
acttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcctcttta |
190 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| | ||| || |
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| T |
31113381 |
acttgcaatttgtgcagcttcttcctcttcaagcatagctgcaaagccattaatctgtttattatatgaataaattattgcttcttttgcattctccttg |
31113480 |
T |
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| Q |
191 |
ctgtgaatgatcagtatataatagttaat |
219 |
Q |
| |
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||||||||||||| |||||| |||||||| |
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| T |
31113481 |
ctgtgaatgatcaatatatattagttaat |
31113509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 31150025 - 31150083
Alignment:
| Q |
270 |
tatatataccttcctacgattgaacccagtaaatcataatgagaagatgtagcagtttc |
328 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31150025 |
tatatataccttcccaagattgaacccagtaaatcataatgagaatatgtagcagtttc |
31150083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 31168317 - 31168375
Alignment:
| Q |
270 |
tatatataccttcctacgattgaacccagtaaatcataatgagaagatgtagcagtttc |
328 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31168317 |
tatatataccttcccaagattgaacccagtaaatcataatgagaatatgtagcagtttc |
31168375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 31197207 - 31197130
Alignment:
| Q |
103 |
tgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgc |
180 |
Q |
| |
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|||||||||||| |||||||| | ||| |||||||||||||| ||||| || || |||||||| |||||||||||||| |
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|
| T |
31197207 |
tgcagcttcttcatcttcaagtagagcagcaaagccattgatgtgtttgttatatgaataaatgattgcttcttttgc |
31197130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 31113575 - 31113627
Alignment:
| Q |
276 |
taccttcctacgattgaacccagtaaatcataatgagaagatgtagcagtttc |
328 |
Q |
| |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31113575 |
taccttcccaatattgaacccagtaaatcataatgagaagatgtagcagtttc |
31113627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 24265660 - 24265577
Alignment:
| Q |
91 |
acttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttc |
174 |
Q |
| |
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|||||||| || ||| |||||||| ||||||| | ||| ||||| |||||||| ||||||||||| || |||| ||||||||| |
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| T |
24265660 |
acttgcaatttttgctgcttcttctacttcaagtacagcagcaaaaccattgatgtgtttattgtatgagtaaaatattgcttc |
24265577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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