View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_high_25 (Length: 307)
Name: NF13978_high_25
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 27844811 - 27844956
Alignment:
| Q |
108 |
ctttttaagtgtcttagaaatatatacctctaataatcatagtgtttagcttgaatcttatgtaagactaggacacataatgtatatacttctttttaat |
207 |
Q |
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| T |
27844811 |
ctttttaagtgtcttagaaatatatacctctaataatcatagtgtttagcttgaatcttatgtaagactaggacacataatgtatatatttctttttaat |
27844910 |
T |
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| Q |
208 |
aagaagcaagnnnnnnnattaaagaggtataaagggtacttgaaacc |
254 |
Q |
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| T |
27844911 |
aagaagcaag-ttttttattaaagaggtataacgggtacttgaaacc |
27844956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 27846027 - 27846075
Alignment:
| Q |
246 |
cttgaaacccattagaacagtaatacatacatacacctctaatattctt |
294 |
Q |
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| T |
27846027 |
cttgaaacgcattagaacaataatacatacatacacctctaattttctt |
27846075 |
T |
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