View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_high_35 (Length: 265)
Name: NF13978_high_35
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 65 - 260
Target Start/End: Original strand, 16585423 - 16585620
Alignment:
| Q |
65 |
agggtcttgttattgtatgacattcgatagtgtaatttatttaaaagtcacgtaatgatat-tatttttcttt-ataagatgattgttgttaagccattg |
162 |
Q |
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| T |
16585423 |
agggtcttgttattgtatgacattcgatagtgtaatttatttaaaagtcacgtaatgatatatattttttttttataagatgattgttgttgagccattg |
16585522 |
T |
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| Q |
163 |
gttgataaaattaatttttctcttgaaaattatttttggttgagacttaatagaactcataccttttactcgtggaaggtagaatcctccatattctt |
260 |
Q |
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| T |
16585523 |
gttgataaaattaatttttctcttgaaaattatttttggttgagacttaatagaactcataccttttactcgtggaaggtagaatcctccatgttctt |
16585620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 16585299 - 16585347
Alignment:
| Q |
4 |
tcaactcttcaagatttgagttaaacaatgaaggcccgtcactcacaaa |
52 |
Q |
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| T |
16585299 |
tcaactcttcaagattttagttaaacaatgaaggcccgtcacccacaaa |
16585347 |
T |
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