View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13978_high_51 (Length: 229)

Name: NF13978_high_51
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13978_high_51
NF13978_high_51
[»] chr5 (2 HSPs)
chr5 (1-113)||(35895330-35895442)
chr5 (1-59)||(35900846-35900904)
[»] chr3 (5 HSPs)
chr3 (1-113)||(53576497-53576609)
chr3 (1-113)||(52056887-52056999)
chr3 (147-199)||(47706388-47706440)
chr3 (1-59)||(52051426-52051484)
chr3 (1-59)||(53568784-53568842)
[»] chr2 (2 HSPs)
chr2 (1-113)||(30201642-30201754)
chr2 (1-59)||(30194029-30194087)
[»] chr1 (6 HSPs)
chr1 (1-113)||(16990156-16990268)
chr1 (1-113)||(31352868-31352980)
chr1 (1-59)||(31358387-31358445)
chr1 (147-198)||(38771499-38771550)
chr1 (1-59)||(16995127-16995185)
chr1 (147-195)||(5975939-5975987)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-113)||(467478-467590)
scaffold0002 (1-59)||(462016-462074)
[»] chr7 (1 HSPs)
chr7 (147-199)||(39842941-39842993)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 35895330 - 35895442
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgtttctattagggaagttattcattgttgctgcaaaaactaacta 100  Q
    |||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||    
T  35895330 aataataaaaatatgaaaactgtccaattacatcatgtcgtgcgcgcgttattttgtttctaccagggaagttattcatcgttgctgcaaaaactaacta 35895429  T
Q  101 gcttgtgccaaaa 113  Q
    |||||||||||||    
T  35895430 gcttgtgccaaaa 35895442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35900904 - 35900846
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgttt 59  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||||||||||| ||||||    
T  35900904 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgcgcgttattttgttt 35900846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 53576609 - 53576497
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgtttctattagggaagttattcattgttgctgcaaaaactaacta 100  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||    
T  53576609 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgcgcgttattttgtttctaccagggaagttattcatcgttgctgcaaaaactaacta 53576510  T
Q  101 gcttgtgccaaaa 113  Q
    |||||||||||||    
T  53576509 gcttgtgccaaaa 53576497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 52056999 - 52056887
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgtttctattagggaagttattcattgttgctgcaaaaactaacta 100  Q
    ||||||||||||||||||||||  |||||| | ||| ||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||    
T  52056999 aataataaaaatatgaaaactgctcaattacatcatgtcgtgcgcgcgttattttgtttctaccagggaagttattcatcgttgctgcaaaaactaacta 52056900  T
Q  101 gcttgtgccaaaa 113  Q
    |||||||||||||    
T  52056899 gcttgtgccaaaa 52056887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 47706440 - 47706388
Alignment:
Q  147 accacttttataccaccctatatggcagggatattttggtaaatttatccatc 199  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  47706440 accactcttataccaccctatgtggcagggatattttagtaaatttatccatc 47706388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52051426 - 52051484
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgttt 59  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||||||||||| ||||||    
T  52051426 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgcgcgttattttgttt 52051484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 53568784 - 53568842
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgttt 59  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||||||||||| ||||||    
T  53568784 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgcgcgttattttgttt 53568842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 30201754 - 30201642
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgtttctattagggaagttattcattgttgctgcaaaaactaacta 100  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||    
T  30201754 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgcgcgttattttgtttctaccagggaagttattcatcgttgctgcaaaaactaacta 30201655  T
Q  101 gcttgtgccaaaa 113  Q
    |||||||||||||    
T  30201654 gcttgtgccaaaa 30201642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30194029 - 30194087
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgttt 59  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||||||||||| ||||||    
T  30194029 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgcgcgttattttgttt 30194087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 16990156 - 16990268
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgtttctattagggaagttattcattgttgctgcaaaaactaacta 100  Q
    |||||||||||||||||||||| ||||||| | ||| ||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  16990156 aataataaaaatatgaaaactgcccaattacatcatgtcgtgtgcgcgttattttgtttctaccagggaagttattcattgttgctgcaaaaactaacta 16990255  T
Q  101 gcttgtgccaaaa 113  Q
    |||||||||||||    
T  16990256 gcttgtgccaaaa 16990268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 31352868 - 31352980
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgtttctattagggaagttattcattgttgctgcaaaaactaacta 100  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||    
T  31352868 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgcgcgttattttgtttctaccagggaagttattcatcgttgctgcaaaaactaacta 31352967  T
Q  101 gcttgtgccaaaa 113  Q
    |||||||||||||    
T  31352968 gcttgtgccaaaa 31352980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31358445 - 31358387
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgttt 59  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||||||||||| ||||||    
T  31358445 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgcgcgttattttgttt 31358387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 38771550 - 38771499
Alignment:
Q  147 accacttttataccaccctatatggcagggatattttggtaaatttatccat 198  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||    
T  38771550 accacttttgtaccaccctatgtggcagggatatttttgtaaatttacccat 38771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16995185 - 16995127
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgttt 59  Q
    |||||||||||||||||||||| ||||||| | ||| |||||||| |||||| ||||||    
T  16995185 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgcacgttattttgttt 16995127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 5975939 - 5975987
Alignment:
Q  147 accacttttataccaccctatatggcagggatattttggtaaatttatc 195  Q
    |||||| || ||||||| ||| ||||||||||||||| |||||||||||    
T  5975939 accactcttctaccaccatatgtggcagggatattttagtaaatttatc 5975987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 467590 - 467478
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgtttctattagggaagttattcattgttgctgcaaaaactaacta 100  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||| ||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||    
T  467590 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgtgcgttattttgtttctaccagggaagttattcatcgttgctgcaaaaactaacta 467491  T
Q  101 gcttgtgccaaaa 113  Q
    |||||||||||||    
T  467490 gcttgtgccaaaa 467478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 462016 - 462074
Alignment:
Q  1 aataataaaaatatgaaaactgtccaattatagcatatcgtgcgcgcgttatcttgttt 59  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||||||||||| ||||||    
T  462016 aataataaaaatatgaaaactgcccaattacatcatgtcgtgcgcgcgttattttgttt 462074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 39842941 - 39842993
Alignment:
Q  147 accacttttataccaccctatatggcagggatattttggtaaatttatccatc 199  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  39842941 accactcttataccaccctatgtggcagggatattttagtaaatttatccatc 39842993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University