View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_high_8 (Length: 488)
Name: NF13978_high_8
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 4174034 - 4174512
Alignment:
| Q |
16 |
atatttataatgaaattgagactattacaaataatgttgatgcatttaatnnnnnnnttaactcaaatgaattatttcaaacataaaaacaactat---- |
111 |
Q |
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| T |
4174034 |
atatttataatgaaattgagactattacaaataatgctgatgcatttaataaaaaaattaactcaaatgaattatttcaaacataaaaacaactatgtat |
4174133 |
T |
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| Q |
112 |
------------------acccttaactatttttcctgactctgtccttgacaatattgtttttaacataacacaccagtgggttctccgactgcgaaat |
193 |
Q |
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| T |
4174134 |
atgtgtaaaattttcgccacccttaactatttttcctgactctgtccctgacaatattgtttctaacataacacaccagtgggttgtccgactgcgaaat |
4174233 |
T |
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| Q |
194 |
cgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtcatca |
293 |
Q |
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| T |
4174234 |
cgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtcatca |
4174333 |
T |
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| Q |
294 |
gagttgatggttgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccaatatttggagtcattgggtgccaagcgt |
393 |
Q |
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| T |
4174334 |
gagttaatggctgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccaatatttggagtcattgggtgccaagcgt |
4174433 |
T |
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| Q |
394 |
ctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagccatcgatccatcaacggagtcaa |
472 |
Q |
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| T |
4174434 |
ctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagccatcgatccatcaacggagtcaa |
4174512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 142 - 470
Target Start/End: Original strand, 4170187 - 4170512
Alignment:
| Q |
142 |
tgacaatattgtttttaacataacacaccagtgggttctccgactgcgaaatcgaacccacaaggtttgccagtatggttagtggaaatatgcgcaacca |
241 |
Q |
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| T |
4170187 |
tgacaatattgttcctaacagaacacaccagcgggttatcccactgcaaagccgaacccacaagatttgcccgtatggttagtggaaatatgcgcggcca |
4170286 |
T |
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| Q |
242 |
tctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtcatcagagttgatggttgcagcaagctttttagcaagaacgactgcatcctct |
341 |
Q |
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| T |
4170287 |
tctttcattgccatatgatctaaaagcgtcttcgatagaagagtc---atcagaatcaattgctgcagcaagctttttagcaagaaccactgcatcctca |
4170383 |
T |
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| Q |
342 |
agagcacaacatgctccttgcccaatatttggagtcattgggtgccaagcgtctccaacgagtacaactctacctctagaaacaggtggacttatccatg |
441 |
Q |
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| T |
4170384 |
agagcacaacaagctccttgcccaagatttggagtcattgggtgccaagcatcaccaacgagtacaactctacctgcagaaacaggtggacttgttgatg |
4170483 |
T |
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| Q |
442 |
gccaaagccatcgatccatcaacggagtc |
470 |
Q |
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| T |
4170484 |
gccaaagccatcgatccaccaacggagtc |
4170512 |
T |
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