View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_high_9 (Length: 435)
Name: NF13978_high_9
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 41132209 - 41132569
Alignment:
| Q |
18 |
gttactccatcatatgcatggagtactagtatgtatcagttgtttattttaatgtgtgcgcattaatcttgctcgatgacaacataattacaataaacta |
117 |
Q |
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| T |
41132209 |
gttactccatcatatgcatggagtactagtatgtatcagttgtttattttaatgtgtgtgcattaatcttggtcgatgacaacataattacaataaacta |
41132308 |
T |
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| Q |
118 |
tccataatgatccagaataattacaataaactactgcataataattaaatcaagattggatctggctaaacttaaggacaaatttgactctaaaaccaag |
217 |
Q |
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| T |
41132309 |
tccataatgatccagaataattacaataaactactgcataataattaaatcaagattggatctggctaaacttaaggacaaatttgactctaaaaccaag |
41132408 |
T |
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| Q |
218 |
gctaataaatcagatagttttccttttgtactcaaatgaaacggtgtttttagaatcgggtccaactagctagttgaaccgaaacttggttaatctttgg |
317 |
Q |
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| T |
41132409 |
gctaataaatcagatagttttccttttgtactcaaatgaaacggtgtttttagaatcgggtccaactagctagttgaaccgaaacttggttaatctttgg |
41132508 |
T |
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| Q |
318 |
agtttcaatcttcattcaggttgattttcaaactcttatagcatcttcaatcacaagtttg |
378 |
Q |
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| T |
41132509 |
agtttcaatcttcattcaggttgattttcaaactcttatagcatcttcaatcacaagtttg |
41132569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 41132563 - 41132609
Alignment:
| Q |
389 |
aagtttgattctataaccactattaaattctcacaccgtcaaatcat |
435 |
Q |
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| T |
41132563 |
aagtttgattctataaccactattaaattctcacaccgtgaaatcat |
41132609 |
T |
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