View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_12 (Length: 413)
Name: NF13978_low_12
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 10984564 - 10984163
Alignment:
| Q |
14 |
tgtgaattggcttcatagcaccatctttattggatgaacctgttg-ttaataggaaaagacactgatgacctacaaagttatctggttagataaatatat |
112 |
Q |
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| T |
10984564 |
tgtgaattggcttcatagcaccatctttattggatgaacctgttggttaatagcaaaagacactgatgacctaaaaagttatctggttagataaatatat |
10984465 |
T |
|
| Q |
113 |
ttcgaagnnnnnnngtgaaatatattgattgattgaaatatatggcatcatatttttcaatttttaattcggtatgttttaaatagacaattttaaataa |
212 |
Q |
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| T |
10984464 |
ttcgaagaaaaaaagtgaaatat----attgattgaaatatatagcatcatatttttcaatttttacttctgtatgttccaaatagacaattttaaataa |
10984369 |
T |
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| Q |
213 |
tgaagtttattataacttcattttctttatttcatttccatttctttata---------------------ggctgtttgttcagcattgttaaatttgt |
291 |
Q |
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| T |
10984368 |
tgaagtttattataacttcattttctttatttcatttccatttctttataggtgtttgggtaacttcggttggctttttgttcagcattgttaaatttgt |
10984269 |
T |
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| Q |
292 |
ccttggagcgccttgcatcattgtattattaatctacaaatgtcgacggaaacatttatctgtttatgatggcattgaagattttctaagaagtgacaat |
391 |
Q |
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| T |
10984268 |
ccttggagcgccttgcatcattgtattattaatctacaaatgtcgacgggaacatttatctgtgtatgatggcattgaagattttctgaggagtgacaat |
10984169 |
T |
|
| Q |
392 |
agcatc |
397 |
Q |
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|||||| |
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| T |
10984168 |
agcatc |
10984163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 208 - 397
Target Start/End: Complemental strand, 11011736 - 11011539
Alignment:
| Q |
208 |
aataatgaagtttattataacttcattttctttatttcatttccatttctttataggc--------tgttt-gttcagcattgttaaatttgtccttgga |
298 |
Q |
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| T |
11011736 |
aataatgaagtttattgtaacttcattt-ctttatctaatttccatttctttataggtgagttgattgttttgttcagcctttttaaatttgttcttgga |
11011638 |
T |
|
| Q |
299 |
gcgccttgcatcattgtattattaatctacaaatgtcgacggaaacatttatctgtttatgatggcattgaagattttctaagaagtgacaatagcatc |
397 |
Q |
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| T |
11011637 |
gcactatgtatgattgtattattaatctacaaatggcgacggaagcatctatctatgtatgacggcgtcgaagattttcttagtagtgacaatagcatc |
11011539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 397
Target Start/End: Complemental strand, 10915425 - 10915238
Alignment:
| Q |
207 |
aaataatgaagtttattataacttcattttctttatttcatttccatttctttataggctgtttgttcagcattgttaaatttgtccttggagcgccttg |
306 |
Q |
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| T |
10915425 |
aaataatgaagcttataataatttcattttcttgatctcatttccgtttcgttatagc---tttgctcgtcggttttaaatttgttcttggagcgccatg |
10915329 |
T |
|
| Q |
307 |
catcattgtattattaatctacaaatgtcgacggaaacatttatctgtttatgatggcattgaagattttctaagaagtgacaatagcatc |
397 |
Q |
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| T |
10915328 |
tatcattgcattattaatctacaaatggagacggaaacatttctctatgtatgacggcgtcgaagactttctacgaagtgacaataacatc |
10915238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 397
Target Start/End: Complemental strand, 11033947 - 11033830
Alignment:
| Q |
280 |
tgttaaatttgtccttggagcgccttgcatcattgtattattaatctacaaatgtcgacggaaacatttatctgtttatgatggcattgaagattttcta |
379 |
Q |
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|||||||||||| ||||||||||| | ||||||| | || ||||||||||||| |||||||||||| |||| | ||||||||||| |||||||||||| |
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| T |
11033947 |
tgttaaatttgttcttggagcgccattgatcattgcactagtaatctacaaatggcgacggaaacatctatcaatgtatgatggcatcgaagattttcta |
11033848 |
T |
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| Q |
380 |
agaagtgacaatagcatc |
397 |
Q |
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| T |
11033847 |
cgtagtgacaatagcatc |
11033830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 397
Target Start/End: Original strand, 11004397 - 11004483
Alignment:
| Q |
311 |
attgtattattaatctacaaatgtcgacggaaacatttatctgtttatgatggcattgaagattttctaagaagtgacaatagcatc |
397 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||| | ||||| ||||||||| |
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| T |
11004397 |
attgtattattaatctacaaatggcgacaaaaacatttatctgtgtatgatggcatcgaagattttctacgcagtgataatagcatc |
11004483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 397
Target Start/End: Complemental strand, 11008494 - 11008377
Alignment:
| Q |
280 |
tgttaaatttgtccttggagcgccttgcatcattgtattattaatctacaaatgtcgacggaaacatttatctgtttatgatggcattgaagattttcta |
379 |
Q |
| |
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|||||||||||| |||||| ||| | |||||||||||||||||| | ||||| ||| ||||||| |||| | ||||||||| | |||||||||||| |
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| T |
11008494 |
tgttaaatttgttcttggattgccatttatcattgtattattaatcaaaaaatggcgaaagaaacatcaatctatgtatgatggcgtcgaagattttcta |
11008395 |
T |
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| Q |
380 |
agaagtgacaatagcatc |
397 |
Q |
| |
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|| ||||| ||||||||| |
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| T |
11008394 |
agtagtgataatagcatc |
11008377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 11027776 - 11027866
Alignment:
| Q |
147 |
gaaatatatggcatcatatttttcaatttttaattcggtatgttttaaatagacaattttaaataatgaagtttattataacttcattttc |
237 |
Q |
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| T |
11027776 |
gaaatatatcgcatcatatttttcaattttcacttcgttatgttctaaacaaaaaataataaataatcaagtttataataatttcattttc |
11027866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 10915519 - 10915485
Alignment:
| Q |
203 |
ttttaaataatgaagtttattataacttcattttc |
237 |
Q |
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| T |
10915519 |
ttttaaataatgaagtttattataatttcattttc |
10915485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 11008569 - 11008519
Alignment:
| Q |
214 |
gaagtttattataacttcattttctttatttcatttccatttctttatagg |
264 |
Q |
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|||||| ||||||| |||||||||||||||||| ||||||||| ||| ||| |
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| T |
11008569 |
gaagttaattataatttcattttctttatttcaattccatttccttacagg |
11008519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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