View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_16 (Length: 386)
Name: NF13978_low_16
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 1316240 - 1316434
Alignment:
| Q |
20 |
atgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaatgaacgag |
119 |
Q |
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| T |
1316240 |
atgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaatgaacgag |
1316339 |
T |
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| Q |
120 |
ttcaaaaggactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
214 |
Q |
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| T |
1316340 |
ttcaaaaggactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgcaattttacataaacatattgtccagagcctaa |
1316434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 211 - 376
Target Start/End: Original strand, 1316474 - 1316639
Alignment:
| Q |
211 |
ctaaatttaaccaagataactagtttttccagcattatctccctgcctcccgggcactctatcactcctagttgttatatttggaagcctattttcataa |
310 |
Q |
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| T |
1316474 |
ctaaatttaaccaagataactagtttttccagcattatctccctgcctcccaggcactctatcactcctagttgttatatttggaagcctattttcataa |
1316573 |
T |
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| Q |
311 |
actcaaggtcacgggaatgcctccatggtatatgccaaatcctaatccagtttttcttcttttctt |
376 |
Q |
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| T |
1316574 |
actcaaggtcacgggaatgcctccatggtatatgccaaatcctaatccagtttttcgtcttttctt |
1316639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 229 - 376
Target Start/End: Original strand, 43486621 - 43486770
Alignment:
| Q |
229 |
actagtttttccagcattatctccctgcctcccgggc--actctatcactcctagttgttatatttggaagcctattttcataaactcaaggtcacggga |
326 |
Q |
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| T |
43486621 |
actagtttttccagcattatctccctgcctcctggtcccactctatcactcctagttgttatatttggaagcctattttcataaactcaaggtcacggga |
43486720 |
T |
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| Q |
327 |
atgcctccatggtatatgccaaatcctaatccagtttttcttcttttctt |
376 |
Q |
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| T |
43486721 |
atgccttcatggtatatgccaaatcctaatccaattttttttcttttctt |
43486770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 43483767 - 43483871
Alignment:
| Q |
20 |
atgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaatgaacgag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43483767 |
atgcttttacttattaaaattaattcttgttgtatttctttagattcaggtaggtatcctgaaacgtgttcttgaagaggtcgaaaaagtaatgaatgag |
43483866 |
T |
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| Q |
120 |
ttcaa |
124 |
Q |
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||||| |
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| T |
43483867 |
ttcaa |
43483871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 43486463 - 43486549
Alignment:
| Q |
128 |
gactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
214 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||| | || |||||||||||||||||||||||||||||||| |
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| T |
43486463 |
gactattgaagcaattaatgtatttgacttgacattaaaatcaaacaaacattgcaattttacataaacatattgtccagagcctaa |
43486549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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