View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_17 (Length: 378)
Name: NF13978_low_17
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 4762524 - 4762781
Alignment:
| Q |
15 |
attctcaacgtggatgttaattaagagtatcacaagtattttttagaggatataatctcaaagttttcttttactaaagttcgatcaaacatatattata |
114 |
Q |
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| T |
4762524 |
attctcaacgtggatgttaattaagagtctcacaagtattttttagaggatataatctcaaagttttcttttactaaagttcgatcaaacatatattata |
4762623 |
T |
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| Q |
115 |
gacttatttacggtctgaaatggctaagtataaatcaatcaaaccaatcaatctcacacaatcataaaatttatttattataatctagtgtcacaaataa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4762624 |
gacttatttacggtctgaaatggctaagtataaatcaatcaaaccaatcaatctcacacaatcataaaatttatttattataatctagtgtcacaaataa |
4762723 |
T |
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| Q |
215 |
aaatatttaaaatctgcagtacatagcattctttcttgtcaagtaatttttattcatg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4762724 |
aaatatttaaaatctgcagtacatagcattctttcttgtcaagtaatttttattcatg |
4762781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 75 - 272
Target Start/End: Complemental strand, 4181309 - 4181104
Alignment:
| Q |
75 |
aagttttcttttactaaagttcgatcaaacatatattatagacttatttacggtctgaaatggct----aagtataaatcaatcaaaccaatcaatctca |
170 |
Q |
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|||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||| |
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| T |
4181309 |
aagttttcttttcctaaaattcgaccaaacttatattatagacttatttacggtctgaaattgctcgatatatataaatcaatcaaacctatcaatctca |
4181210 |
T |
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| Q |
171 |
cacaatcataaaatttatttattataatctagtgtcacaaataaaaatatttaaaatctgca----gtacatagcattctttcttgtcaagtaattttta |
266 |
Q |
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| T |
4181209 |
cacaatcataatatttatttattataatctagtgtcacaaataaaaatatttaaaatctgcagtacgtacatagcattctttcttgtcaagtaattttta |
4181110 |
T |
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| Q |
267 |
ttcatg |
272 |
Q |
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|||||| |
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| T |
4181109 |
ttcatg |
4181104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 4177454 - 4177284
Alignment:
| Q |
106 |
tatattatagacttatttacggtctgaaatggct----aagtataaatcaatcaaaccaatcaatctcacacaatcataaaatttatttattataatcta |
201 |
Q |
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|||||||||||||||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
4177454 |
tatattatagacttatttacggtctgaaattgctcgatatatataaatcaattaaacctatcaatctcacacaatcataatatttatttattataatctg |
4177355 |
T |
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| Q |
202 |
gtgtcacaaataaaaatatttaaaatctgcagtacatagcattctttcttgtcaagtaatttttattcatg |
272 |
Q |
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| T |
4177354 |
gtgtcacaaataaaaatatttataatctgcagtacatagcactctttcttgtcaagtaatttttattcatg |
4177284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 4638281 - 4638401
Alignment:
| Q |
97 |
gatcaaacatatattatagacttatttacggtctgaaatggctaagtata------aatcaatcaaaccaatcaatctcacacaatcataaaatttattt |
190 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||| |||||||||| |||||||||||||| |||||||| |
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| T |
4638281 |
gatcaaacatatattatagacttatttacgctctaaaatggctaggtatatatataaatcaatcgcaccaatcaatatcacacaatcataatatttattt |
4638380 |
T |
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| Q |
191 |
attataatctagtgtcacaaa |
211 |
Q |
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|||||||||| |||||||||| |
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| T |
4638381 |
attataatctggtgtcacaaa |
4638401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 4638421 - 4638478
Alignment:
| Q |
302 |
gttgccaactaggagagcacatattactatagaaaacaaacagcttggtaactaggac |
359 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4638421 |
gttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggac |
4638478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 4762824 - 4762881
Alignment:
| Q |
302 |
gttgccaactaggagagcacatattactatagaaaacaaacagcttggtaactaggac |
359 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4762824 |
gttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggac |
4762881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 4181069 - 4181013
Alignment:
| Q |
303 |
ttgccaactaggagagcacatattactatagaaaacaaacagcttggtaactaggac |
359 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4181069 |
ttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggac |
4181013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 4177244 - 4177188
Alignment:
| Q |
302 |
gttgccaactaggagagcacatattactata--gaaaacaaacagcttggtaactag |
356 |
Q |
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|||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
4177244 |
gttgccaagtaggagagtacatattactatatagaaaacaaacagcttggtaactag |
4177188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 4638032 - 4638097
Alignment:
| Q |
43 |
atcacaagtattttt--tagaggatataatctcaaagttttcttttactaaagttcgatcaaacata |
107 |
Q |
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||||||||||||||| |||| ||||||||||| | |||||||||||||||| |||||||||||||| |
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| T |
4638032 |
atcacaagtatttttgttagatgatataatctcga-gttttcttttactaaaattcgatcaaacata |
4638097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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