View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13978_low_23 (Length: 340)
Name: NF13978_low_23
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 92 - 325
Target Start/End: Original strand, 39259822 - 39260055
Alignment:
| Q |
92 |
gttgaaattgatcggtgaaaaaccctaaaattttctgattcttcttcacggggtttgatttgttcaattttggttgaattaaaccctagatttgaattct |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39259822 |
gttgaaattgatcggtgaaaaaccctaaaattttctgattcttcttcacggggtttgatttgttcaattttggttcaattaaaccctagatttgaattct |
39259921 |
T |
|
| Q |
192 |
aaaattttctagggtttggagttgttttttggtgagggaaaataagaattagggttttgaatgaatggattcggggactgtagttgaagataaggtagtt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39259922 |
aaaattttctagggtttggagttgttttttggtgagggaaaattagaattagggttttgaatgaatggattcggggactgtagttgaagataaggtagtt |
39260021 |
T |
|
| Q |
292 |
agagagatacagagatactcggaggggaaagtat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
39260022 |
agagagatacagagatactcggaggggaaagtat |
39260055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 97 - 325
Target Start/End: Original strand, 39248770 - 39248998
Alignment:
| Q |
97 |
aattgatcggtgaaaaaccctaaaattttctgattcttcttcacggggtttgatttgttcaattttggttgaattaaaccctagatttgaattctaaaat |
196 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
39248770 |
aattgttcggttaaaaatcctaattttttctgattcatcttcaccgggtttgatttgttcaattttggttcaattaaaccctagatttgaattctagggt |
39248869 |
T |
|
| Q |
197 |
tttctagggtttggagttgttttttggtgagggaaaataagaattagggttttgaatgaatggattcggggactgtagttgaagataaggtagttagaga |
296 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39248870 |
tttctagggtttggaattgatttttggtgagggaaaataagaattagggttttgaatgaatggattcggggactgtagttgaagataaggtagttagaga |
39248969 |
T |
|
| Q |
297 |
gatacagagatactcggaggggaaagtat |
325 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
39248970 |
gatacagagatactcggagggaaaagtat |
39248998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 39259737 - 39259794
Alignment:
| Q |
23 |
tgttcgagatctgatacagagtgaaggtaactctactctgcgtgtttcattcttcttg |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39259737 |
tgttcgagatctgatacagagtgaaggtaactctactctgcgtgtttcattcttcttg |
39259794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 39248684 - 39248738
Alignment:
| Q |
23 |
tgttcgagatctgatacagagtgaaggtaactctactctgcgtgtttcattcttc |
77 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39248684 |
tgttctagatctgatacagagtgaaggtaactcgactctgcgtgtttcattcttc |
39248738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University