View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_24 (Length: 332)
Name: NF13978_low_24
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 125 - 284
Target Start/End: Original strand, 15514489 - 15514648
Alignment:
| Q |
125 |
acgaataacaaccaatgcaagacaaacacgaaccgataccatttttggaaccggagcaaatgtctcattaaaatcaatactagcaacttgattgttgcca |
224 |
Q |
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| T |
15514489 |
acgaataacaaccaatgcaagaaaaacacgaaccgataccatttttgcaaccggagcaaatgtctcaaaaaaaccaataccaacaacttgattgttgcca |
15514588 |
T |
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| Q |
225 |
ataataacaagatgtgctttgtgtcgttcaatagtaccattgcaacagctcgattttcgt |
284 |
Q |
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| T |
15514589 |
ataataacaagatgtgctttgtgtcgttcaatagtaccattgtaacagcttgattttcgt |
15514648 |
T |
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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 15512636 - 15512719
Alignment:
| Q |
41 |
ggctggctattgatggtactgaaaagaaggtttacgatgatggttggtttgaacttattggatacaagaaaacgggatacctta |
124 |
Q |
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| T |
15512636 |
ggctggctattgatggtactggaaagaaggtttatgatgatggctggtttgaaattattggatacaagaaaacgggatacctta |
15512719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 16327982 - 16327899
Alignment:
| Q |
41 |
ggctggctattgatggtactgaaaagaaggtttacgatgatggttggtttgaacttattggatacaagaaaacgggatacctta |
124 |
Q |
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| T |
16327982 |
ggctggctattgatggtactggaaagaatgtttatgatgatggttggtttgaacttattgcatacgagagaaccggatatctta |
16327899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 16351401 - 16351321
Alignment:
| Q |
41 |
ggctggctattgatggtactgaaaagaaggtttacgatgatggttggtttgaacttattggatacaagaaaacgggatacctta |
124 |
Q |
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| T |
16351401 |
ggctggctattgatggtactggaaagaatgttca---tgatggttggtttgaacttactagatacaagagatcgggatacctta |
16351321 |
T |
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