View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_25 (Length: 330)
Name: NF13978_low_25
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 51649792 - 51650074
Alignment:
| Q |
9 |
gaagcaaagggaaagggaattttgcaacaccatcaagtgattgctgagtttgaggaaattcctgaagagagtagacagaagttgactgatggtgcatttg |
108 |
Q |
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| T |
51649792 |
gaagcaaagggaaagggaattttgcaacaccatcaagtgattgctgagtttgaggaaattcctgaagatagtagacagaagttgactgatggtgcatttg |
51649891 |
T |
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| Q |
109 |
gtgaagttttgagatccacacaggtaatttatttttatcattatgtgtgtgt-gtata-ataaattcatatgctttgttgattttttcatgannnnnnna |
206 |
Q |
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| T |
51649892 |
gtgaagttttgagatccacacaggtaatttattttgatcattatgtgtgtgtattatatataaattcatatgctttgttgattttttcatgattttttta |
51649991 |
T |
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| Q |
207 |
ggaagcaatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtatttgggagtatctgagagtgaatgtgc |
289 |
Q |
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| T |
51649992 |
ggaagcaatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtatttgggagtatctgagagtaaatgtgc |
51650074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 55866910 - 55866834
Alignment:
| Q |
213 |
aatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtatttgggagtatctgagagtgaatgtgc |
289 |
Q |
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| T |
55866910 |
aatagttttgccaccatgggttgctcttgctgttcgtctaaggccaggtatttgggattatctaagagtgaatgtgc |
55866834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 29143862 - 29143938
Alignment:
| Q |
213 |
aatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtatttgggagtatctgagagtgaatgtgc |
289 |
Q |
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| T |
29143862 |
aatagttctgccaccatgggttgctcttgctgttcgtctaatgccaggtatttgagagtatctaagagtgaacgtgc |
29143938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 19155674 - 19155599
Alignment:
| Q |
206 |
aggaagcaatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtatttgggagtatctgagagt |
281 |
Q |
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| T |
19155674 |
aggaagctgtagtattgccaccatttgttgctcttgctgttcgcccaaggcccggtgtttgggagtatctaagagt |
19155599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 19155903 - 19155834
Alignment:
| Q |
9 |
gaagcaaagggaaagggaattttgcaacaccatcaagtgattgctgagtttgaggaaattcctgaagaga |
78 |
Q |
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| T |
19155903 |
gaagcaaaggggaagggaatcctacagcaccatcaagtaattgctgagtttgaagaaatccctgaggaga |
19155834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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