View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_26 (Length: 318)
Name: NF13978_low_26
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_26 |
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| [»] scaffold1652 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 37238018 - 37237714
Alignment:
| Q |
2 |
cttataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctac |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |
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| T |
37238018 |
cttataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctataaagttgtgttgatgcttgtggctacactatttgttagttccac |
37237919 |
T |
|
| Q |
102 |
cttcgctcaatctccatcttcatctcccaccatatctcctgttgccacacctgcgatctctccctccactgactcatcggcggcatctcctcccgtacct |
201 |
Q |
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| | ||||||||||| || |||||||| |||||||| || ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
37237918 |
cattgctcaatctccttcatcatctccaaccatatcacccgttgccacacctgcgatctctccctccgctgactcaccggtggcatctcctcccgtacct |
37237819 |
T |
|
| Q |
202 |
gtgaagacgtctccatctccttcagcatccgccgccaactctccacctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatct |
301 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| |
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| T |
37237818 |
gtgaagacgtctccatctcctttagcatccgccgtcaactctccacctgcttcctctaactctctcg------ctcctgctgttactccatcatccatct |
37237725 |
T |
|
| Q |
302 |
ctgctcctcct |
312 |
Q |
| |
|
|| |||||||| |
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|
| T |
37237724 |
ctactcctcct |
37237714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 37253358 - 37253036
Alignment:
| Q |
2 |
cttataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctac |
101 |
Q |
| |
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|||||||| ||||| ||| |||||||||| |||| ||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37253358 |
cttataaaccctaattttttattctccttcatcaaatttttacaatggcttcatacacagttgttttgatgcttgtggctacactattggttagttctac |
37253259 |
T |
|
| Q |
102 |
cttcgctcaatctccatcttcatctcccaccatatctcctgttgccacacctgcgatctctccctccactgactcatcggcggcatctcctcccgtacct |
201 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |
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| T |
37253258 |
cttcgctcaatctccatcttcatctcccaccatatcccctgttgccacacctgcgatctctccctccgctgactcaccggcggcatctgctcccatacct |
37253159 |
T |
|
| Q |
202 |
gtgaagacgtctccatctccttcagcatccgccgccaactctcca------------cctgcttcctctgactctcccgctgtttctcctgctgttactc |
289 |
Q |
| |
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||||||| |||||||||||||| | || ||| |||||||||| |||||||| || |||||||||||||| ||||||||| |||||| |
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| T |
37253158 |
gtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcctgcttcatccgactctcccgctgtctctcctgctcttactc |
37253059 |
T |
|
| Q |
290 |
catcatccatctctgctcctcct |
312 |
Q |
| |
|
|||||||||| || |||||||| |
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| T |
37253058 |
catcatccatttccactcctcct |
37253036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 149
Target Start/End: Complemental strand, 37257477 - 37257330
Alignment:
| Q |
2 |
cttataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctac |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| |||||||||||||||||||| ||||||||||| || |
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| T |
37257477 |
cttataaaccctaaaatttcattctccttcttcaactttctacaatggcttcttacacagttgtattgatgcttgtggctacactgttggttagttccac |
37257378 |
T |
|
| Q |
102 |
cttcgctcaatctccatcttcatctcccaccatatctcctgttgccac |
149 |
Q |
| |
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| ||||||||||| || |||||||| |||||||| || |||||||| |
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| T |
37257377 |
tattgctcaatctccttcatcatctccaaccatatcacccgttgccac |
37257330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 37233094 - 37232863
Alignment:
| Q |
5 |
ataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctacctt |
104 |
Q |
| |
|
||||| ||||| ||||||| || |||||||| ||| || |||||||||||||||||||||||||||||||||||| || | ||||| ||||| ||||| |
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| T |
37233094 |
ataaaccctaatttttcattttcattcttcaaatttttactatggcttcctacaaagttgtgttgatgcttgtggctgcattgttggtgagttccacctt |
37232995 |
T |
|
| Q |
105 |
cgctcaatctccatcttcatctcccaccatatctcctgttgccacacctgcgatctctccctccactgactcatcggcggcatctcctcccgtacctgtg |
204 |
Q |
| |
|
||||||||| ||||| |||||||| ||| |||| |||||||||||||||||| || ||||| |||| ||||||||||||| ||||||| |
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| T |
37232994 |
cgctcaatcaccatcgtcatctccgtccaaatct------------cctgcgatctctccctccgctcactcaccggctgcatctcctcccgcacctgtg |
37232907 |
T |
|
| Q |
205 |
aagacgtctccatctccttcagcatccgccgccaactctccacc |
248 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||||||||| |
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| T |
37232906 |
aagaattctccatctccttcgccatccgccatcaactctccacc |
37232863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 21187674 - 21187587
Alignment:
| Q |
30 |
tcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctaccttcgctcaatctcca |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21187674 |
tcttcaattttctacaatggcttcctacaaagttgcattgatgcttgtggctacactattggttagttctaccttcgctcaatctcca |
21187587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 27245614 - 27245502
Alignment:
| Q |
5 |
ataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctacctt |
104 |
Q |
| |
|
||||| ||||| ||| ||||| | |||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
27245614 |
ataaaccctaatttttaattcttcgtcttcaattttctacaatggtttcctacaaagttgcattgatccttgtggctacactattggttagttctatctt |
27245515 |
T |
|
| Q |
105 |
cgctcaatctcca |
117 |
Q |
| |
|
||||||||||||| |
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| T |
27245514 |
cgctcaatctcca |
27245502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 37257235 - 37257170
Alignment:
| Q |
247 |
cctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctgctcctcct |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
37257235 |
cctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctactactcct |
37257170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 37242427 - 37242325
Alignment:
| Q |
26 |
tccttcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctaccttcgctcaatctccatcttcatc |
125 |
Q |
| |
|
|||||| |||| |||| || ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || | ||||| ||| ||||| |
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| T |
37242427 |
tccttcatcaaatttctactatggcttcctacatggttgtgttgatgcttgtggcctcactattggttagttctacctttgcacgatctctatcatcatc |
37242328 |
T |
|
| Q |
126 |
tcc |
128 |
Q |
| |
|
||| |
|
|
| T |
37242327 |
tcc |
37242325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 396 - 453
Alignment:
| Q |
151 |
cctgcgatctctccctccactgactcatcggcggcatctcctcccgtacctgtgaaga |
208 |
Q |
| |
|
|||||||| ||||||||| || ||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
396 |
cctgcgatttctccctccgctaactcaacggtggcatctgctcccgtacctgtgaaga |
453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 14351745 - 14351689
Alignment:
| Q |
240 |
ctctccacctgcttcctctgactctcccgctgtttctcctgctgttactccatcatc |
296 |
Q |
| |
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|||||| | |||||||| || ||||||||||| |||||||||||||||||||||| |
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|
| T |
14351745 |
ctctcctcatgcttcctttggttctcccgctgtcgctcctgctgttactccatcatc |
14351689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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