View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_3 (Length: 559)
Name: NF13978_low_3
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 11125849 - 11125307
Alignment:
| Q |
1 |
tgtaaggataattcataattgaatggcatataccactatagatgaagcctcttcatcttcttctccttccatccaaacatcaagatggaccaaccatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11125849 |
tgtaaggataattcataattgaatggcatataccactatagatgaagcctcttcatcttcttctccttccatccaaacatcaagatggaccaaccatgtt |
11125750 |
T |
|
| Q |
101 |
ttcttgagttttagaggtgaggatactcgccaaggtttcactgaccatctttttgcttcattggaaagaagagggatcaaaacatttaaggatgatcatg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11125749 |
ttcttgagttttagaggtgaggacactcgccaaggtttcactgaccatctttttgcttcattggaaagaagagggatcaaaacattcaaggatgatcatg |
11125650 |
T |
|
| Q |
201 |
atcttgagaggggtgaagtgatatcatatgaactcaataaagccattgaagagtctatgtttgctatcatcattctctcaccaaactatgcttcctcaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11125649 |
atcttgagaggggtgaagtgatatcatatgaactcaataaagccattgaagagtctatgtttgctatcatcattctctcaccaaactatgcttcctcaac |
11125550 |
T |
|
| Q |
301 |
atggtgtttggatgagctacaaaagattgttgagtgcagtaagagttttggtcaagctgtttttccaatcttctatggtgttgatccatctgatgtcagg |
400 |
Q |
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| T |
11125549 |
atggtgtttggatgagctaaaaaagattgttgagtgcagtaagagttttggtcaagctgtttttccaatcttctatggtgttgatccatctgatgtcagg |
11125450 |
T |
|
| Q |
401 |
catcagagaggaagctttgatgaagcttttagaaaacatgaagaaaagttccgaaaagatagaacgaaagtggaaagatggagagatgctttaagagaag |
500 |
Q |
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| T |
11125449 |
catcagagaggaagctttgatgaagcttttagaaaacatgaagaaaagttccggaaagatagaacgaaagtggaaagatggagagatgctttaagagaag |
11125350 |
T |
|
| Q |
501 |
ttgctggttactctggttgggactccaagggccggttagttgt |
543 |
Q |
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| T |
11125349 |
ttgctggttactctggttgggactccaagggccggttagttgt |
11125307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 6097925 - 6097893
Alignment:
| Q |
283 |
aaactatgcttcctcaacatggtgtttggatga |
315 |
Q |
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| T |
6097925 |
aaactatgcttcctcaaaatggtgtttggatga |
6097893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 358 - 533
Target Start/End: Original strand, 29571203 - 29571378
Alignment:
| Q |
358 |
tgtttttccaatcttctatggtgttgatccatctgatgtcaggcatcagagaggaagctttgatgaagcttttagaaaacatgaagaaaagttccgaaaa |
457 |
Q |
| |
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|||||| ||| ||||||||||||| |||||||||||||| |||||||| |||||| ||||||| |||||||| ||||||||| |||| || ||| | || |
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| T |
29571203 |
tgttttgccagtcttctatggtgtggatccatctgatgtaaggcatcaaagaggatgctttgaggaagctttcagaaaacatcaagagaaattcggtcaa |
29571302 |
T |
|
| Q |
458 |
gatagaacgaaagtggaaagatggagagatgctttaagagaagttgctggttactctggttgggactccaagggcc |
533 |
Q |
| |
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| || | || || ||||||||||||||||| | | ||||||| |||||||||| |||||||||||||||| |
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| T |
29571303 |
cacagtgacagggttgatagatggagagatgctttcacacaagttgccagttactctggatgggactccaagggcc |
29571378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 358 - 439
Target Start/End: Complemental strand, 29821126 - 29821045
Alignment:
| Q |
358 |
tgtttttccaatcttctatggtgttgatccatctgatgtcaggcatcagagaggaagctttgatgaagcttttagaaaacat |
439 |
Q |
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| T |
29821126 |
tgttttgccagtcttctatggtgtggatccgtctgatgtaaggcatcaaagaggaagctttgaggaagccttcagaaaacat |
29821045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 439
Target Start/End: Complemental strand, 29829901 - 29829714
Alignment:
| Q |
249 |
aagagtctatgtttgctatcatcattctctcaccaaactatgcttcctcaacatggtgtttggatgagctacaaaagattgttgagtgcagtaagagttt |
348 |
Q |
| |
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|||| ||||||||||| |||| | ||||||||| ||||||||||||| || |||||||||||||| || |||| ||| | || ||||| || | |
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| T |
29829901 |
aagattctatgtttgccatcactgtcctctcaccagactatgcttcctccacctggtgtttggatgaacttcaaatgatcatggaatgcagcaataag-- |
29829804 |
T |
|
| Q |
349 |
tggtcaagctgtttttccaatcttctatggtgttgatccatctgatgtcaggcatcagagaggaagctttgatgaagcttttagaaaacat |
439 |
Q |
| |
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|||| || ||||| ||| ||||||||||||| |||||||||||||| || ||||| |||||| ||||||| ||| |||| ||||||||| |
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| T |
29829803 |
-ggtctagaagttttaccagtcttctatggtgtggatccatctgatgtaagacatcaaagaggatgctttgaggaatctttcagaaaacat |
29829714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 29571094 - 29571168
Alignment:
| Q |
249 |
aagagtctatgtttgctatcatcattctctcaccaaactatgcttcctcaacatggtgtttggatgagctacaaa |
323 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||| |||||||||| || || ||||||||||||||||| |||| |
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| T |
29571094 |
aagattctatgtttgccatcactattctctcaccagactatgcttcttccacttggtgtttggatgagcttcaaa |
29571168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 29821235 - 29821145
Alignment:
| Q |
249 |
aagagtctatgtttgctatcatcattctctcaccaaactatgcttcctcaacatggtgtttggatgagctacaaaagattgttgagtgcag |
339 |
Q |
| |
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|||| ||||||||||| |||| ||| |||||||| ||||||| || || || ||||||||||||||||| |||| ||| | |||||||| |
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| T |
29821235 |
aagattctatgtttgccatcactattatctcaccagactatgcatcttccacttggtgtttggatgagcttcaaatgatcatggagtgcag |
29821145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 533
Target Start/End: Complemental strand, 29829677 - 29829620
Alignment:
| Q |
476 |
agatggagagatgctttaagagaagttgctggttactctggttgggactccaagggcc |
533 |
Q |
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| T |
29829677 |
agatggagagatgctttcacacaagttgccagttactctggatgggattccaagggcc |
29829620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 447
Target Start/End: Complemental strand, 36399542 - 36399460
Alignment:
| Q |
365 |
ccaatcttctatggtgttgatccatctgatgtcaggcatcagagaggaagctttgatgaagcttttagaaaacatgaagaaaa |
447 |
Q |
| |
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||||||||||| ||||| ||||| |||||||| ||| |||| || ||||| |||| ||| ||||||| |||||||||||||| |
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| T |
36399542 |
ccaatcttctacggtgtagatccctctgatgtaaggaatcaaaggggaagttttgctgaggcttttaagaaacatgaagaaaa |
36399460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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