View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13978_low_30 (Length: 293)

Name: NF13978_low_30
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13978_low_30
NF13978_low_30
[»] chr1 (1 HSPs)
chr1 (14-293)||(39195840-39196119)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 39196119 - 39195840
Alignment:
Q  14 cacttgtttccagcaaacaattttccattgtcttgacatgagtacttatacacattgccccactgtcttcattaatgtcatctaacaactcactaagccc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39196119 cacttgtttccagcaaacaattttccattgtcttgacatgagtacttatacacattgccccactgtcttcattaatgtcatctaacaactcactaagccc 39196020  T
Q  114 taagatgtcgtcacataattcatacgttgtttctttctcatcatgtgttgtttttacctccacgtcatcgattattttctctgtaacttcacaatctagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39196019 taagatgtcgtcacataattcatacgttgtttctttctcatcatgtgttgtttttacctccacgtcatcgattattttctctgtaacttcacaatctagt 39195920  T
Q  214 gaaggagtacgtggaatttgaacttctggttcaatataattttctttagtattaataatggtttgttttttgtagctttt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39195919 gaaggagtacgtggaatttgaacttctggttcaatataattttctttagtattaataatggtttgttttttgtagctttt 39195840  T

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