View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_32 (Length: 285)
Name: NF13978_low_32
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 10456078 - 10455922
Alignment:
| Q |
56 |
actatttcatttctttatttaacagttcattattaaactttattaaaagaactgtannnnnnn-ggtaaagattagatttttatgggaatgttcaatgca |
154 |
Q |
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| T |
10456078 |
actatttcatttctttatttaacagttcataattaaactttattaaaagaactgtattttttttggtaaagattagatttttatgggaatgttcaatgca |
10455979 |
T |
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| Q |
155 |
tttaagttgaatgagaaattgacagtaaccatccactgttttatcacatagggtcag |
211 |
Q |
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| T |
10455978 |
tttaagttgaatgagaaattgacagtaaccatccactgttttatcacatagggtcag |
10455922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 10456125 - 10456094
Alignment:
| Q |
12 |
catcatcactagtcaaaggtatttcgttttca |
43 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
10456125 |
catcatcactagtcaaaggtatttcgttttca |
10456094 |
T |
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