View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13978_low_33 (Length: 276)

Name: NF13978_low_33
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13978_low_33
NF13978_low_33
[»] chr4 (12 HSPs)
chr4 (98-259)||(4723031-4723197)
chr4 (28-106)||(1868039-1868118)
chr4 (13-85)||(10396390-10396461)
chr4 (15-86)||(47681134-47681205)
chr4 (38-85)||(10396129-10396176)
chr4 (45-86)||(11197231-11197272)
chr4 (15-60)||(47680888-47680933)
chr4 (15-87)||(47680596-47680668)
chr4 (17-60)||(47680347-47680390)
chr4 (29-87)||(51681240-51681296)
chr4 (38-86)||(11307402-11307450)
chr4 (45-85)||(11307692-11307732)
[»] chr3 (13 HSPs)
chr3 (15-106)||(54017639-54017731)
chr3 (15-98)||(17732004-17732087)
chr3 (15-98)||(19033235-19033318)
chr3 (15-86)||(40195932-40196003)
chr3 (15-87)||(43978686-43978758)
chr3 (30-106)||(16871050-16871127)
chr3 (31-86)||(43978981-43979036)
chr3 (28-85)||(43481578-43481633)
chr3 (20-85)||(32201020-32201084)
chr3 (45-86)||(23162190-23162231)
chr3 (34-89)||(16869621-16869676)
chr3 (32-85)||(23161832-23161884)
chr3 (38-86)||(48127927-48127975)
[»] chr5 (7 HSPs)
chr5 (13-106)||(14168907-14169001)
chr5 (30-106)||(5963673-5963750)
chr5 (15-106)||(41341431-41341522)
chr5 (32-106)||(41340271-41340346)
chr5 (30-86)||(3294928-3294984)
chr5 (15-87)||(36389105-36389176)
chr5 (28-98)||(34103542-34103612)
[»] chr6 (5 HSPs)
chr6 (30-106)||(21130148-21130225)
chr6 (32-98)||(22605355-22605421)
chr6 (44-106)||(22605111-22605174)
chr6 (45-86)||(7301412-7301453)
chr6 (38-80)||(21297251-21297293)
[»] chr7 (8 HSPs)
chr7 (30-106)||(48071376-48071453)
chr7 (13-85)||(11776177-11776248)
chr7 (40-87)||(11776458-11776505)
chr7 (27-98)||(27391869-27391939)
chr7 (15-75)||(8802468-8802528)
chr7 (45-73)||(2463162-2463190)
chr7 (35-106)||(8802199-8802271)
chr7 (38-86)||(36675191-36675239)
[»] chr8 (8 HSPs)
chr8 (30-98)||(12156758-12156826)
chr8 (16-86)||(5981554-5981624)
chr8 (15-81)||(2954342-2954407)
chr8 (38-87)||(14028323-14028372)
chr8 (45-86)||(29103326-29103367)
chr8 (40-81)||(2954625-2954666)
chr8 (37-86)||(5981845-5981894)
chr8 (30-78)||(11576034-11576082)
[»] chr1 (8 HSPs)
chr1 (30-86)||(15327846-15327902)
chr1 (30-87)||(4392303-4392360)
chr1 (29-87)||(25294898-25294956)
chr1 (15-84)||(31973449-31973517)
chr1 (16-86)||(4392022-4392092)
chr1 (45-87)||(27686635-27686677)
chr1 (15-85)||(43834471-43834540)
chr1 (32-69)||(25294960-25294997)
[»] chr2 (3 HSPs)
chr2 (38-85)||(13792607-13792654)
chr2 (38-86)||(28226335-28226383)
chr2 (38-86)||(35448727-35448775)
[»] scaffold0014 (1 HSPs)
scaffold0014 (30-106)||(197719-197796)
[»] scaffold0548 (1 HSPs)
scaffold0548 (45-85)||(4182-4222)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 4723197 - 4723031
Alignment:
Q  98 agagagggactccccaagtattaat----atttataaggttaatctctacatagattgtttcaatatcaatccattgatcaattatacttaggatcagta 193  Q
    |||||||||||||||||||||||||    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4723197 agagagggactccccaagtattaattaatatttataaggtgaatctccacatagattgtttcaatatcaatccattgatcaattatacttaggatctgta 4723098  T
Q  194 aaattggggaggaatggtttgcaatccaattaag-tttcgaataaatcaggaaagaaaggtgattaa 259  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4723097 aaattggggaggaatggtttgcaatccaattaagttttcgaataaatcaggaaagaaaggtgattaa 4723031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 1868039 - 1868118
Alignment:
Q  28 tttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    ||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||| |||| |||||| |||||||||    
T  1868039 tttgtcgggtaatcaagtgtgagtgattatgtcccacatcgactaagaatggaggaaataaatgatatataagagaggga 1868118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 10396390 - 10396461
Alignment:
Q  13 atacttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaa 85  Q
    ||||||||||||||| |||||||  |||||| ||||||||||||||||||| || |||||| |||||||||||    
T  10396390 atacttgagggggagattgttgga-aatcaagtgtgagtgattatgtctcatattgactagaaatggaggaaa 10396461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 47681134 - 47681205
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    ||||||||||||| |||||||| ||| || |||||||||||||||| | |||||| ||| ||||||||||||    
T  47681134 acttgagggggagattgttgggaaataaagtgtgagtgattatgtcccgcatcgattagaaatggaggaaac 47681205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 10396129 - 10396176
Alignment:
Q  38 aatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaa 85  Q
    |||||| |||||||||||||||||||||||||| || |||||||||||    
T  10396129 aatcaagtgtgagtgattatgtctcacatcgacaagaaatggaggaaa 10396176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 11197231 - 11197272
Alignment:
Q  45 tgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  11197231 tgtgagtgattatgcctcacatcgactagaaatggaggaaac 11197272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 47680888 - 47680933
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtc 60  Q
    ||||||||||||| |||||||| |||||| ||||||||||||||||    
T  47680888 acttgagggggagattgttgggaaatcaagtgtgagtgattatgtc 47680933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 47680596 - 47680668
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaaca 87  Q
    |||||||||| || |||||||  ||| || |||||||||||||||| |||||||| ||  |||||||||||||    
T  47680596 acttgaggggaagattgttggaaaattaagtgtgagtgattatgtcccacatcgattataaatggaggaaaca 47680668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 47680347 - 47680390
Alignment:
Q  17 ttgagggggagtttgttgggtaatcaaatgtgagtgattatgtc 60  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||    
T  47680347 ttgagggggagattgttgggaaatcaagtgtgagtgattatgtc 47680390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 51681240 - 51681296
Alignment:
Q  29 ttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaaca 87  Q
    |||||||| |||||| |||| ||||||||||||  |||||||||||||||||| |||||    
T  51681240 ttgttgggaaatcaagtgtgggtgattatgtct--catcgactaggaatggagaaaaca 51681296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 11307450 - 11307402
Alignment:
Q  38 aatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    |||||| ||||| ||| ||||||||||||| ||||| ||||||||||||    
T  11307450 aatcaagtgtgactgactatgtctcacatcaactagaaatggaggaaac 11307402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 11307732 - 11307692
Alignment:
Q  45 tgtgagtgattatgtctcacatcgactaggaatggaggaaa 85  Q
    ||||||||||| ||||||||||||||||  |||||||||||    
T  11307732 tgtgagtgattgtgtctcacatcgactataaatggaggaaa 11307692  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 54017731 - 54017639
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||  |||||| |||||||||    
T  54017731 acttgagggggagattgttgggtaatcaagtgtgagtgattatgtctcacatcgactaggaatggaagaaacaaaggatatataagagaggga 54017639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 17732087 - 17732004
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatata 98  Q
    ||||||| ||||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  17732087 acttgagtgggaggttgttggataatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacaaaggatatata 17732004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 19033318 - 19033235
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatata 98  Q
    ||||||| ||||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  19033318 acttgagtgggaggttgttggataatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacaaaggatatata 19033235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 40196003 - 40195932
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    ||||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  40196003 acttgagggggagattgttgggaaatcaagtgtgagtgattatgtttcacatcgactaggaatggaggaaac 40195932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 43978758 - 43978686
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaaca 87  Q
    ||||||||||||| |||||||  |||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  43978758 acttgagggggagattgttggaaaatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaaca 43978686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 16871127 - 16871050
Alignment:
Q  30 tgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    |||||||||||||| |||||||||||||||| |||||||| | |||||||||||||||||  |||||| |||||||||    
T  16871127 tgttgggtaatcaagtgtgagtgattatgtcccacatcgatttggaatggaggaaacaaagaatatataagagaggga 16871050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 43979036 - 43978981
Alignment:
Q  31 gttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  43979036 gttgggaaatcaaatgtgagtgattatgtcccacatcgactaagaatggaggaaac 43978981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 43481578 - 43481633
Alignment:
Q  28 tttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaa 85  Q
    ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||    
T  43481578 tttgttgggt--tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaa 43481633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 32201020 - 32201084
Alignment:
Q  20 agggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaa 85  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||  |||| ||||||    
T  32201020 agggggagattgttggg-aatcaaatgtgagtgattatgtctcacatcgactaaaaatgaaggaaa 32201084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 23162190 - 23162231
Alignment:
Q  45 tgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  23162190 tgtgagtgattatgtcccacatcgattaggaatggaggaaac 23162231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 16869676 - 16869621
Alignment:
Q  34 gggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaa 89  Q
    |||||||||| |||||||||||||||| ||  |||| ||||||| |||||||||||    
T  16869676 gggtaatcaagtgtgagtgattatgtcccatgtcgattaggaatagaggaaacaaa 16869621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 23161832 - 23161884
Alignment:
Q  32 ttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaa 85  Q
    ||||| |||||| |||||||||||||||| ||||||||||| |||| |||||||    
T  23161832 ttgggaaatcaagtgtgagtgattatgtc-cacatcgactaagaatagaggaaa 23161884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 48127975 - 48127927
Alignment:
Q  38 aatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    ||||||||||||||||||||||| |||||| ||||  ||||| ||||||    
T  48127975 aatcaaatgtgagtgattatgtcacacatcaactataaatggtggaaac 48127927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 14168907 - 14169001
Alignment:
Q  13 atacttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    ||||||||||||||| ||||||| ||||||| ||| || ||||||||| ||||||||||||||||||||||||||||  |||||| |||||||||    
T  14168907 atacttgagggggagattgttggataatcaagtgtaagggattatgtcccacatcgactaggaatggaggaaacaaaggatatataagagaggga 14169001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 5963673 - 5963750
Alignment:
Q  30 tgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||  |||||| |||||||||    
T  5963673 tgttgggtaatcaagtgtgtgtgattatgtcccacatcgactaggaatggaggaaacaaaggatatataagagaggga 5963750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 41341431 - 41341522
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    ||||||||||||| || |||||||||||| |||||||||||||||| ||||| |||||||||||||||| |||||  |||||| |||||||||    
T  41341431 acttgagggggagattattgggtaatcaagtgtgagtgattatgtcccacat-gactaggaatggaggagacaaaggatatataagagaggga 41341522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 41340271 - 41340346
Alignment:
Q  32 ttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||  |||||| |||||||||    
T  41340271 ttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggaggagacaaaagatatataagagaggga 41340346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 3294984 - 3294928
Alignment:
Q  30 tgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  3294984 tgttgggtaatcaagtgtgagtgattatgtcccatatcgactaggaatggaggaaac 3294928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 36389176 - 36389105
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaaca 87  Q
    |||||||||||||||||||||| |||||| || ||||||| ||||| |||||| ||||| ||||||| |||||    
T  36389176 acttgagggggagtttgttggg-aatcaagtgcgagtgataatgtcccacatcaactagaaatggagcaaaca 36389105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 34103542 - 34103612
Alignment:
Q  28 tttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatata 98  Q
    |||||||| ||||||| |||||||||||||||  |||||||| ||| ||||||||||| |||  |||||||    
T  34103542 tttgttggataatcaagtgtgagtgattatgttccacatcgaatagaaatggaggaaataaaggatatata 34103612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 21130225 - 21130148
Alignment:
Q  30 tgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||| |||||||||    
T  21130225 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacaaaagatatataagagaggga 21130148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 22605421 - 22605355
Alignment:
Q  32 ttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatata 98  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||  |||||||    
T  22605421 ttgggtaatcaagtgtgagtgattatgttccacatcgactaggaatggaggaaacaaaggatatata 22605355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 22605174 - 22605111
Alignment:
Q  44 atgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||  |||||| |||||||||    
T  22605174 atgtgggtgattatgtcccacatcgactaggaacggaggaaacaaaggatatataagagaggga 22605111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 7301453 - 7301412
Alignment:
Q  45 tgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  7301453 tgtgagtgattatgtcccacatcgactagaaatggaggaaac 7301412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 21297293 - 21297251
Alignment:
Q  38 aatcaaatgtgagtgattatgtctcacatcgactaggaatgga 80  Q
    |||||| ||||||||||| |||| |||||||||||||||||||    
T  21297293 aatcaagtgtgagtgattgtgtcccacatcgactaggaatgga 21297251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 48071376 - 48071453
Alignment:
Q  30 tgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||  |||||| |||||||||    
T  48071376 tgttgggtaatcaagtgtcagtgattatgtcccacatcgactaggaatggaggaaacaaaggatatataagagaggga 48071453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 11776248 - 11776177
Alignment:
Q  13 atacttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaa 85  Q
    ||||||||||||||| |||||||| | |||| ||||| |||||||||| |||||| |||||||||||||||||    
T  11776248 atacttgagggggagattgttggg-attcaagtgtgaatgattatgtcccacatcaactaggaatggaggaaa 11776177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 11776505 - 11776458
Alignment:
Q  40 tcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaaca 87  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||||    
T  11776505 tcaagtgtgagtgattatgtcccacatcaactaggaatggaggaaaca 11776458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 27391939 - 27391869
Alignment:
Q  27 gtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatata 98  Q
    ||||||||| ||||||| |||||||||||||||| |||||| | |||||||||||||| ||||  |||||||    
T  27391939 gtttgttggataatcaagtgtgagtgattatgtcccacatc-aataggaatggaggaagcaaaggatatata 27391869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 8802468 - 8802528
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactagga 75  Q
    |||||||||  || ||||||||||||| | |||||||||||||||| |||||||| |||||    
T  8802468 acttgagggaaagattgttgggtaatctagtgtgagtgattatgtcccacatcgattagga 8802528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 2463162 - 2463190
Alignment:
Q  45 tgtgagtgattatgtctcacatcgactag 73  Q
    |||||||||||||||||||||||||||||    
T  2463162 tgtgagtgattatgtctcacatcgactag 2463190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 8802199 - 8802271
Alignment:
Q  35 ggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    ||||||||| ||||||||||||| |  |||||  || ||||||||||||||||||  |||||| |||||||||    
T  8802199 ggtaatcaagtgtgagtgattatattccacattaacgaggaatggaggaaacaaaggatatataagagaggga 8802271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 36675191 - 36675239
Alignment:
Q  38 aatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    ||||||||||||||||| ||||| |||||||||||  ||||||| ||||    
T  36675191 aatcaaatgtgagtgataatgtcccacatcgactataaatggagaaaac 36675239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 12156826 - 12156758
Alignment:
Q  30 tgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatata 98  Q
    |||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||  |||||||    
T  12156826 tgttgggtaatcaagtgtgagtgattatgtcccacatcgattaggaatggaggaaacaaaagatatata 12156758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 5981624 - 5981554
Alignment:
Q  16 cttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    |||||||||||| ||||| || |||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  5981624 cttgagggggagattgtttggaaatcaagtgtgagtgattatgtcccacatcgactaggaatggagaaaac 5981554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 2954407 - 2954342
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggag 81  Q
    ||||||||||||| |||||| ||  |||| ||||||||||||| || ||||||||||||||||||||    
T  2954407 acttgagggggagattgttgagtt-tcaagtgtgagtgattatttcccacatcgactaggaatggag 2954342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 14028323 - 14028372
Alignment:
Q  38 aatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaaca 87  Q
    |||||| ||||||||||||||||  ||||||||||||||| |||||||||    
T  14028323 aatcaagtgtgagtgattatgtcctacatcgactaggaatagaggaaaca 14028372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 29103367 - 29103326
Alignment:
Q  45 tgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    ||||||| || |||||||||||||||||||||||||||||||    
T  29103367 tgtgagtaatcatgtctcacatcgactaggaatggaggaaac 29103326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 2954666 - 2954625
Alignment:
Q  40 tcaaatgtgagtgattatgtctcacatcgactaggaatggag 81  Q
    |||| |||||||||||||||| ||||| ||||||||||||||    
T  2954666 tcaagtgtgagtgattatgtcccacatagactaggaatggag 2954625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 5981894 - 5981845
Alignment:
Q  37 taatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    ||||||| |||||| ||||||||| |||||| | ||||||||||||||||    
T  5981894 taatcaagtgtgagggattatgtcccacatcaattaggaatggaggaaac 5981845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 11576034 - 11576082
Alignment:
Q  30 tgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatg 78  Q
    |||||||||||||| ||||||| |||||||| ||| ||||||| |||||    
T  11576034 tgttgggtaatcaagtgtgagtcattatgtcccacgtcgactaagaatg 11576082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 15327846 - 15327902
Alignment:
Q  30 tgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15327846 tgttgggaaatcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaac 15327902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 4392360 - 4392303
Alignment:
Q  30 tgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaaca 87  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  4392360 tgttgggaaatcaagtgtgagtgattatgtctcacatcgactatgaatggaggaaaca 4392303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 25294956 - 25294898
Alignment:
Q  29 ttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaaca 87  Q
    ||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||    
T  25294956 ttgttgggtaatcaagtgtgagtgattatgtcccacattggctaggaatggaggaaaca 25294898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 31973517 - 31973449
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaa 84  Q
    ||||||||||||| |||||||  |||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  31973517 acttgagggggagattgttgga-aatcaagtgtgagtgattatgtctcacaccgactagaaatggaggaa 31973449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 4392092 - 4392022
Alignment:
Q  16 cttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    ||||||||  || |||||||| |||||| ||| |||||||||||| |||||||| ||||||||||||||||    
T  4392092 cttgagggaaagattgttgggaaatcaactgtaagtgattatgtcccacatcgagtaggaatggaggaaac 4392022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 27686677 - 27686635
Alignment:
Q  45 tgtgagtgattatgtctcacatcgactaggaatggaggaaaca 87  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  27686677 tgtgagtgattatgttccacatcgactaggaatggaggaaaca 27686635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 43834471 - 43834540
Alignment:
Q  15 acttgagggggagtttgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaa 85  Q
    |||||||| |||| |||||||||  |||| ||||||||||||| |||||||||| ||| ||||||| ||||    
T  43834471 acttgaggtggagattgttgggtt-tcaagtgtgagtgattatatctcacatcggctaagaatggatgaaa 43834540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 25294997 - 25294960
Alignment:
Q  32 ttgggtaatcaaatgtgagtgattatgtctcacatcga 69  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  25294997 ttgggtaatcaattgtgagtgattatgtcccacatcga 25294960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 13792654 - 13792607
Alignment:
Q  38 aatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaa 85  Q
    |||||| |||||||||||||||| |||||| ||||| |||||||||||    
T  13792654 aatcaagtgtgagtgattatgtcccacatcaactagaaatggaggaaa 13792607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 28226335 - 28226383
Alignment:
Q  38 aatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    |||||| |||||||| | ||||| |||||||||||| ||||||||||||    
T  28226335 aatcaagtgtgagtgttaatgtcccacatcgactagaaatggaggaaac 28226383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 35448775 - 35448727
Alignment:
Q  38 aatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaac 86  Q
    |||||| ||||  ||||||||||||||||||||||| ||| ||||||||    
T  35448775 aatcaagtgtgtatgattatgtctcacatcgactagaaatagaggaaac 35448727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 197719 - 197796
Alignment:
Q  30 tgttgggtaatcaaatgtgagtgattatgtctcacatcgactaggaatggaggaaacaaattatatat-agagaggga 106  Q
    ||||| ||||||||||||||||||||||| | || |||||||| |||| |  ||||||||  |||||| |||||||||    
T  197719 tgttgagtaatcaaatgtgagtgattatgacccatatcgactaagaatagcagaaacaaaggatatataagagaggga 197796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 4222 - 4182
Alignment:
Q  45 tgtgagtgattatgtctcacatcgactaggaatggaggaaa 85  Q
    ||||||||||| ||||||||||||||||  |||||||||||    
T  4222 tgtgagtgattgtgtctcacatcgactataaatggaggaaa 4182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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