View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_34 (Length: 275)
Name: NF13978_low_34
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 49918767 - 49919026
Alignment:
| Q |
1 |
agaaacaaaattccaattttaacacaacattacagtgcacttattgaaagctcattatttctcataaaacaacttaaaatagataagaaatagcataata |
100 |
Q |
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| T |
49918767 |
agaaacaaaattccaattttaacacaacattacagtgcacttattgaaagctcattatttctcataaaacaacttaaactagataagaaatagcataata |
49918866 |
T |
|
| Q |
101 |
gcagagcccagattcacttcaaccacacttgaaataagcaaaaatctcaaaccatgcttgaattgcataatgaggaacacactattgccatctccatgta |
200 |
Q |
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| T |
49918867 |
acagagcccaaattcacttcaaccacacttgaaataagcaaaaatctcaaaccatgcttgaattgcataatgaggaacacaccattgccatctccatgta |
49918966 |
T |
|
| Q |
201 |
tagctgtaacaacagaaacgaaatatacagaacaacacatcctgaagttgaagctcaaac |
260 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49918967 |
tagttgtaacaacagaaacgaaatatacagaacaacacatcctgaagttgaagctcaaac |
49919026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 26530096 - 26530245
Alignment:
| Q |
24 |
acaacattacagtgcacttattgaaagctcattatttctcataaaacaacttaaaatagataagaaatagcataatagcagagcccagattcacttcaac |
123 |
Q |
| |
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||||||| | || ||||| |||| |||||||||||||||||||| |||||||||| |||||| |||||| ||||||| | |||| | |||||||||| | |
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| T |
26530096 |
acaacatcagagggcactaattggaagctcattatttctcataagacaacttaaactagatacgaaataacataataaccaagcctaaattcacttcagc |
26530195 |
T |
|
| Q |
124 |
cacacttgaaataagcaaaaatctcaaaccatgcttgaattgcataatga |
173 |
Q |
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| T |
26530196 |
cacacttgaaataagcaaaaatctcagcccatgcatgaattgcatgatga |
26530245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 36574551 - 36574700
Alignment:
| Q |
24 |
acaacattacagtgcacttattgaaagctcattatttctcataaaacaacttaaaatagataagaaatagcataatagcagagcccagattcacttcaac |
123 |
Q |
| |
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||||||| | || ||||| |||| |||||| ||||||||||||| |||||||||| |||||||||||| ||||||| | | || | |||||||||| | |
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| T |
36574551 |
acaacatgagagggcactaattggaagctctttatttctcataagacaacttaaactagataagaaatgacataataaccaaccctaaattcacttcagc |
36574650 |
T |
|
| Q |
124 |
cacacttgaaataagcaaaaatctcaaaccatgcttgaattgcataatga |
173 |
Q |
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|||| |||||||||| ||||||||||| ||||| |||||||||| |||| |
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| T |
36574651 |
cacatttgaaataagtaaaaatctcaacccatgtctgaattgcatgatga |
36574700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 36667249 - 36667112
Alignment:
| Q |
36 |
tgcacttattgaaagctcattatttctcataaaacaacttaaaatagataagaaatagcataatagcagagcccagattcacttcaaccacacttgaaat |
135 |
Q |
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|||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||||| | |||| | |||||||||||||||||||||||| |
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| T |
36667249 |
tgcactaattggaagctcattatttctcataagacaacttaaactagataagaaataacataataaccaagcctaaattcacttcaaccacacttgaaat |
36667150 |
T |
|
| Q |
136 |
aagcaaaaatctcaaaccatgcttgaattgcataatga |
173 |
Q |
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| T |
36667149 |
aagcaaaaatctcaacccatgcctgaattgcatgatga |
36667112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 31621579 - 31621430
Alignment:
| Q |
24 |
acaacattacagtgcacttattgaaagctcattatttctcataaaacaacttaaaatagataagaaatagcataatagcagagcccagattcacttcaac |
123 |
Q |
| |
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||||||| | || ||||| |||| |||||||||||||||||||| |||||||||| |||||||||||| ||||||| | | || | |||||||||| | |
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| T |
31621579 |
acaacatgagagggcactaattggaagctcattatttctcataagacaacttaaactagataagaaatgacataataaccaaccctaaattcacttcagc |
31621480 |
T |
|
| Q |
124 |
cacacttgaaataagcaaaaatctcaaaccatgcttgaattgcataatga |
173 |
Q |
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|||| |||||||||||||||||||||| |||||| |||||||||| |||| |
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| T |
31621479 |
cacatttgaaataagcaaaaatctcaacccatgcctgaattgcatgatga |
31621430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 16728337 - 16728486
Alignment:
| Q |
24 |
acaacattacagtgcacttattgaaagctcattatttctcataaaacaacttaaaatagataagaaatagcataatagcagagcccagattcacttcaac |
123 |
Q |
| |
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||||||| |||| ||||| ||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||||| | | | | |||||||||| | |
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| T |
16728337 |
acaacatgacagggcactaattgaaagctcattatttctcataagacaacttaaactagagaagaaatgacataataaccaaccttaaattcacttcagc |
16728436 |
T |
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| Q |
124 |
cacacttgaaataagcaaaaatctcaaaccatgcttgaattgcataatga |
173 |
Q |
| |
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|||| |||||||||||||||||||||| |||||| |||||||||| |||| |
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| T |
16728437 |
cacatttgaaataagcaaaaatctcaacccatgcctgaattgcatgatga |
16728486 |
T |
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