View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_38 (Length: 262)
Name: NF13978_low_38
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 8423893 - 8424124
Alignment:
| Q |
18 |
aacaccagcatcaccaacaacaccaatagccataccagcagacaagccagcaagaccacaagcaagaccagaagaaagatgagcatatccatcaaaaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8423893 |
aacaccagcatcaccaacaacaccaatagccataccagcagacaagccagcaagaccacaagcaagaccagaagaaagatgagcatatccatcaaaaaga |
8423992 |
T |
|
| Q |
118 |
taataagatttagccttagggttaatcccagtactaataatcacagcaataatcaaaccataaatacccaaaacaccagccataacaacaggaacgattg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8423993 |
taataagatttagccttagggttaatcccagtactaataatcacagcaataatcaaaccataaatacccaaaacaccagccataacaacaggaacgattg |
8424092 |
T |
|
| Q |
218 |
atttcataacaagttcaggtctcatcacaccc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
8424093 |
atttcataacaagttcaggtctcatcacaccc |
8424124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 32246619 - 32246392
Alignment:
| Q |
18 |
aacaccagcatcaccaacaacaccaatagccataccagcagacaagccagcaagaccacaagcaagaccagaagaaagatgagcatatccatcaaaaaga |
117 |
Q |
| |
|
|||||| |||||||| || | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |||||||| ||| |
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| T |
32246619 |
aacaccggcatcaccgacgattccaatagccataccagcagaaagaccagcaagaccacaagcaagaccagaagaaagatgagcgtaaccatcaaagaga |
32246520 |
T |
|
| Q |
118 |
taataagatttagccttagggttaatcccagtactaataatcacagcaataatcaaaccataaatacccaaaacaccagccataacaacaggaacgattg |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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|
| T |
32246519 |
taataagatttagccttaggattaatcccagtactaataataacagcaataatcaaaccataaatacccaaaacaccagccataacaacaggaacaatag |
32246420 |
T |
|
| Q |
218 |
atttcataacaagttcaggtctcatcac |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
32246419 |
atttcataacaagttcaggtctcatcac |
32246392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 27330353 - 27330584
Alignment:
| Q |
18 |
aacaccagcatcaccaacaacaccaatagccataccagcagacaagccagcaagaccacaagcaagaccagaagaaagatgagcatatccatcaaaaaga |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| | |||||||| |||||||||||||| || |||||||| ||||| ||||||||||| |
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|
| T |
27330353 |
aacaccagcatcaccaacaatcccaatagccataccagcagaaagcccagcaagcccacaagcaagaccggatgaaagatgtgcatagccatcaaaaagg |
27330452 |
T |
|
| Q |
118 |
taataagatttagccttagggttaatcccagtactaataatcacagcaataatcaaaccataaatacccaaaacaccagccataacaacaggaacgattg |
217 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||||||| || || || | |
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|
| T |
27330453 |
taataagatttggcctttgggttaattccagtactgataataacagcaataataagaccataaatacccaaaacaccagccataacaactggtacaatcg |
27330552 |
T |
|
| Q |
218 |
atttcataacaagttcaggtctcatcacaccc |
249 |
Q |
| |
|
| ||||| || ||||| ||||||||||||||| |
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|
| T |
27330553 |
acttcatcacgagttccggtctcatcacaccc |
27330584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 21666198 - 21666103
Alignment:
| Q |
150 |
actaataatcacagcaataatcaaaccataaatacccaaaacaccagccataacaacaggaacgattgatttcataacaagttcaggtctcatcac |
245 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |||||||||||| |
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| T |
21666198 |
actaataataactgcaataatcaaaccataaatacccaaaacaccggccataacaacaggaacaaaagatttcataacaagttaaggtctcatcac |
21666103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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