View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_40 (Length: 253)
Name: NF13978_low_40
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_40 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 41919611 - 41919490
Alignment:
| Q |
132 |
gtagaaagatgaaattaaaatatttaccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacat |
231 |
Q |
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| T |
41919611 |
gtagaaagatgaaattaaaatatttaccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacat |
41919512 |
T |
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| Q |
232 |
ctcttgcattctagtcatcata |
253 |
Q |
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| T |
41919511 |
ctcttgcattctagtcatcata |
41919490 |
T |
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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 26784994 - 26785090
Alignment:
| Q |
155 |
ttaccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacatctcttgcattctagtcatca |
251 |
Q |
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| T |
26784994 |
ttaccattgaagccaaagaaggcataagtagaagaccccacttcttgttcaaccgtaaaatgataatcaagtgacatcttttgcatcctcgtcatca |
26785090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 26791197 - 26791291
Alignment:
| Q |
155 |
ttaccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacatctcttgcattctagtcat |
249 |
Q |
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| T |
26791197 |
ttaccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcat |
26791291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 26831633 - 26831728
Alignment:
| Q |
154 |
tttaccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacatctcttgcattctagtcat |
249 |
Q |
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| T |
26831633 |
tttaccgttgaagccaaagaaggcgtaagaggaagatccaacttcttgttcaactgtaaaatgataattgagtgacatctcttgcatccttgtcat |
26831728 |
T |
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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 26817885 - 26817980
Alignment:
| Q |
156 |
taccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacatctcttgcattctagtcatca |
251 |
Q |
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| T |
26817885 |
taccattgaagccaaagaaggcgtaagcggaagatcccacttcttgttctaccttaaaatgataatcgagtgacatttgttgcatcctcgtcatca |
26817980 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 20237292 - 20237385
Alignment:
| Q |
155 |
ttaccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacatctcttgcattctagtca |
248 |
Q |
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||||| |||||||||||||| |||| ||| | || || |||||||| || || || ||||||||||| | ||||||||||||||||| |||| |
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| T |
20237292 |
ttaccattgaagccaaagaaagcatgagtagctgatccaacttcttgctcaactgtgaaatggtaatccaaagacatctcttgcattcttgtca |
20237385 |
T |
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