View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13978_low_43 (Length: 243)

Name: NF13978_low_43
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13978_low_43
NF13978_low_43
[»] chr1 (2 HSPs)
chr1 (11-77)||(37775157-37775223)
chr1 (147-199)||(37775035-37775087)
[»] chr4 (1 HSPs)
chr4 (154-199)||(8814533-8814578)
[»] chr2 (1 HSPs)
chr2 (156-199)||(16603134-16603177)
[»] chr3 (1 HSPs)
chr3 (154-199)||(43393725-43393770)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 37775223 - 37775157
Alignment:
Q  11 acatcatcaaattacgatcatagggtatccgtttcaatcccttcttcttcttccttcgaaaccctag 77  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37775223 acatcatcaaattacgatcatagggtatccgtttcaatcacttcttcttcttccttcgaaaccctag 37775157  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 37775087 - 37775035
Alignment:
Q  147 ccattaccatgaatcttccatcatcaaaacccattctctctgaatctcctccc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37775087 ccattaccatgaatcttccatcatcaaaacccattctctctgaatctcctccc 37775035  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 8814533 - 8814578
Alignment:
Q  154 catgaatcttccatcatcaaaacccattctctctgaatctcctccc 199  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||    
T  8814533 catgaatcttccatcatcaaaacccattctctctaaatcccctccc 8814578  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 16603134 - 16603177
Alignment:
Q  156 tgaatcttccatcatcaaaacccattctctctgaatctcctccc 199  Q
    |||||||||||| |||| ||||||||||||||||||| ||||||    
T  16603134 tgaatcttccataatcagaacccattctctctgaatcccctccc 16603177  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 43393770 - 43393725
Alignment:
Q  154 catgaatcttccatcatcaaaacccattctctctgaatctcctccc 199  Q
    |||||||||||||| |||||||||||||| || |||||| ||||||    
T  43393770 catgaatcttccataatcaaaacccattccctttgaatcccctccc 43393725  T

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