View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_46 (Length: 239)
Name: NF13978_low_46
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 35229009 - 35228796
Alignment:
| Q |
10 |
agcacagatacgacctcaggaccaggggatgcaacaatggaatcatgacgtacaattgtaccatcatagtctaaaaatattgccctgcattttgtcattt |
109 |
Q |
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| T |
35229009 |
agcacagatacgacctcaggaccaggggatgcaacaatggaatcatgacgtacaattgtaccatcatagtctaaaaatattgccctgcattttgtccttt |
35228910 |
T |
|
| Q |
110 |
tatatgcagaaacaacgtagtttctagacagcttcttgaatttcggagagagggacaaaactctgaactccaggccaaatccgaaaccccagcaaagttt |
209 |
Q |
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|||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35228909 |
tatatgcagaaacaacatagtttctggacagcttcttgaaattcggagacagggacaaaactctgaactccaggccaaatctgaaaccccagcaaagttt |
35228810 |
T |
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| Q |
210 |
cttaccatgatcct |
223 |
Q |
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|||||||||||||| |
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| T |
35228809 |
cttaccatgatcct |
35228796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 27619984 - 27619771
Alignment:
| Q |
10 |
agcacagatacgacctcaggaccaggggatgcaacaatggaatcatgacgtacaattgtaccatcatagtctaaaaatattgccctgcattttgtcattt |
109 |
Q |
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|||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| || ||| |
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| T |
27619984 |
agcacatatacgacctcaggactgggggatgcaacaatgggatcatgaggtacaattgttacatcatagtctaaaaatattgccctgcattttttccttt |
27619885 |
T |
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| Q |
110 |
tatatgcagaaacaacgtagtttctagacagcttcttgaatttcggagagagggacaaaactctgaactccaggccaaatccgaaaccccagcaaagttt |
209 |
Q |
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|||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
27619884 |
tatatgcataaacaatgtagtttctagacagcttctttaaattcggagagagggacaaaactctgacctccaggccaaagccgaaaccccagcaaagttt |
27619785 |
T |
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| Q |
210 |
cttaccatgatcct |
223 |
Q |
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|||||||||||||| |
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| T |
27619784 |
cttaccatgatcct |
27619771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 27620195 - 27620308
Alignment:
| Q |
107 |
ttttatatgcagaaacaacgtagtttctagacagcttcttgaatttcggagagagggacaaaactctgaactccaggccaaatccgaaaccccagcaaag |
206 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |
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| T |
27620195 |
ttttatatgcataaacaatgtagtttctagacagcttcttgaaattcggagagagggacaaaactctaaactccaggccaaagccgaaaccccagaaaag |
27620294 |
T |
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| Q |
207 |
tttcttaccatgat |
220 |
Q |
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|||||||||||||| |
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| T |
27620295 |
tttcttaccatgat |
27620308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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