View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_48 (Length: 238)
Name: NF13978_low_48
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 22684362 - 22684148
Alignment:
| Q |
1 |
gctcaataaaaaatcatactaaatttaatgaaatgaaacgacaagctgttgcagcatcagataaccctcaaagcttctgtcttagcacaaggcataaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
22684362 |
gctcaataaaaaatcatactaaatttaatgaaatgaaacgacaagctgttgcggcatcagataaccctcaaatcttctgtcttagcacaacacataaagt |
22684263 |
T |
|
| Q |
101 |
aatattttccattccatttccataacaatatcatgataaatgaatgtattctaaaacattatcatcttcatttatctattattttcatttcagcaatttt |
200 |
Q |
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|||| |||||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22684262 |
aatactttccatttcat------aagaatatcatgataaatgaatgtattctaaaacatcatcatcttcatttatctattattttcatttcagcaatttt |
22684169 |
T |
|
| Q |
201 |
tatccaccttacataacacca |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
22684168 |
tatccaccttacataacacca |
22684148 |
T |
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