View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13978_low_49 (Length: 238)
Name: NF13978_low_49
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_49 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 33989934 - 33990051
Alignment:
| Q |
70 |
gagttacaaaacaaattaaagtgtagaaagcaccgatcacaaatgagacaagagatgacagcaaagaaaaggacagttgcattacataattattataacc |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33989934 |
gagttacaaaacaaattaaagtgtagaaagcaccgatcacaaatgagacaagagatgacagcaaagaaaaggacagttgcattacataattattataacc |
33990033 |
T |
|
| Q |
170 |
tgacagaaacagaaacag |
187 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33990034 |
tgacagaaacagaaacag |
33990051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 33990045 - 33990073
Alignment:
| Q |
193 |
gaaacagtatgcacgagaagagaaacagt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
33990045 |
gaaacagtatgcacgagaagagaaacagt |
33990073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University