View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_5 (Length: 503)
Name: NF13978_low_5
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 14 - 492
Target Start/End: Original strand, 47382571 - 47383049
Alignment:
| Q |
14 |
aaatcaacattaatttatacgggaatatatgtgaattaaaatcttattaatactattggtcataagcnnnnnnnntgaaacaatgatgtgatgtgaatgc |
113 |
Q |
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| T |
47382571 |
aaatcaacattaatttatacgggaatgtatgtgaattaaaatcttattaatactattggtcataagcaaaaaaaatgaaacaatgatgtgatgtgaatgc |
47382670 |
T |
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| Q |
114 |
caccaaagaacttatatccatggacacattaaggcaagttatcatgaggatatttgaatttgcttcatcaatgcagacagaacatatcatgcctagtagg |
213 |
Q |
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| T |
47382671 |
caccaaagaacttatatccatggacacattaaggcaagttatcatgaggatatttgaatttgcttcatcaatgcagacagaacatatcatgcctagtagg |
47382770 |
T |
|
| Q |
214 |
actcactattgtgtatatatccttgaaatttcaaaccctacgcagaaaaataaaaggcattggatcttgttttgttggatctagattttcccaaaacaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47382771 |
actcactattgtgtatatatccttgaaatttcaaaccctacgcagaaaaataaaaggcattggatcttgttttgttggatctagattttcccaaaacaca |
47382870 |
T |
|
| Q |
314 |
atcatgatgcatggatcagacagccccaaacacgtacctaaaccactattttagcgaatcataattcttgtaaaacattgattttccccccataacattt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47382871 |
atcatgatgcatggatcagacagccccaaacacgtacctaaaccactattttagcgaatcataattcttgtaaaacattgatttttcccccataacattt |
47382970 |
T |
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| Q |
414 |
tcttcaccatttgtatataaacatataattcatcaagcacttactcttttatttcaaaggttttgtactcatgtttcat |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47382971 |
tcttcaccatttgtatataaacatataattcatcaagcacttactcttttatttcaaaggttttgtactcatgtttcat |
47383049 |
T |
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