View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_52 (Length: 236)
Name: NF13978_low_52
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7352938 - 7353159
Alignment:
| Q |
1 |
ttaccttctttcaagaacaagaatgttggcatagcctcaacagaccattcctcagcaacactctgaaataggccaaattggaaacttagaaacatgttcc |
100 |
Q |
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| T |
7352938 |
ttaccttctttcaagaacaagaatgttggcatagcctcaacagaccattccttagcaacactctgaaataggccaaattggaaacttagaaacatgttcc |
7353037 |
T |
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| Q |
101 |
aaacaatgttactatagcatgatcataagatcacagaacatggtaaactttgattgtgttatcttagtttggcagaattatgatgtcctactgcgatttt |
200 |
Q |
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| T |
7353038 |
aaacaatgttactatagcatgatcataagatgacagaacatggtaaattttgattgtgttatctgagtttggcagaatcatgatgtcctactgtgatttt |
7353137 |
T |
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| Q |
201 |
gacaaaagctacacttcagagt |
222 |
Q |
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| T |
7353138 |
gacaaaagctacacttcagagt |
7353159 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 52666760 - 52666823
Alignment:
| Q |
4 |
ccttctttcaagaacaagaatgttggcatagcctcaacagaccattcctcagcaacactctgaa |
67 |
Q |
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| T |
52666760 |
ccttctttcaagaacaggaatgttggcatagcatcaactgcccactcctcagcaacagtctgaa |
52666823 |
T |
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