View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_54 (Length: 232)
Name: NF13978_low_54
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 34725102 - 34724902
Alignment:
| Q |
11 |
agattattctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacnnnnnnnnnnn----gaggtaaaatttgaatt |
106 |
Q |
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| T |
34725102 |
agattattctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacatttattttttttttgaggtaaaatttgaatt |
34725003 |
T |
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| Q |
107 |
agagccgtttggattttattttcattttatgatacaagtttgaattacaaaaatatcatttccgtttataagtgtttgtacccgtatataatggatttaa |
206 |
Q |
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| T |
34725002 |
agagccgtttggattttattttcattttatgatacaagtttgaattacaaaaatatcatttccgtttccaagtgtttgtacccgtatataatggatttaa |
34724903 |
T |
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| Q |
207 |
a |
207 |
Q |
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| T |
34724902 |
a |
34724902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 34729217 - 34729157
Alignment:
| Q |
18 |
tctgatcataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaac |
78 |
Q |
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| T |
34729217 |
tctgatcatactaaaagtcattttatttgtcatatgtcaaagtgcagtggtaattttgaac |
34729157 |
T |
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