View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13978_low_59 (Length: 223)

Name: NF13978_low_59
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13978_low_59
NF13978_low_59
[»] chr4 (6 HSPs)
chr4 (27-207)||(43407268-43407449)
chr4 (16-140)||(229784-229911)
chr4 (49-142)||(48085404-48085499)
chr4 (27-138)||(23125951-23126065)
chr4 (16-137)||(36233753-36233877)
chr4 (103-136)||(16529832-16529865)
[»] chr2 (6 HSPs)
chr2 (29-142)||(32406858-32406974)
chr2 (16-140)||(43994210-43994337)
chr2 (27-142)||(16870310-16870424)
chr2 (27-71)||(15735980-15736024)
chr2 (69-142)||(36005781-36005855)
chr2 (101-141)||(6190236-6190276)
[»] chr6 (1 HSPs)
chr6 (43-140)||(6605910-6606009)
[»] chr1 (10 HSPs)
chr1 (10-138)||(27740434-27740565)
chr1 (16-142)||(4248926-4249053)
chr1 (16-133)||(14099695-14099815)
chr1 (27-136)||(52575400-52575511)
chr1 (43-129)||(12268317-12268405)
chr1 (60-138)||(29636185-29636265)
chr1 (27-81)||(15728127-15728182)
chr1 (74-136)||(15342891-15342953)
chr1 (103-136)||(48379476-48379509)
chr1 (74-142)||(9694109-9694177)
[»] chr5 (7 HSPs)
chr5 (11-142)||(37145889-37146025)
chr5 (27-142)||(33530923-33531037)
chr5 (16-142)||(14126167-14126296)
chr5 (44-140)||(23418752-23418850)
chr5 (101-142)||(19279425-19279466)
chr5 (103-142)||(9622440-9622479)
chr5 (47-140)||(24765166-24765261)
[»] chr7 (5 HSPs)
chr7 (16-140)||(9907191-9907318)
chr7 (30-143)||(2472861-2472976)
chr7 (44-140)||(31115149-31115247)
chr7 (74-135)||(16706702-16706763)
chr7 (74-135)||(17680938-17680999)
[»] chr3 (3 HSPs)
chr3 (16-130)||(1765618-1765735)
chr3 (103-135)||(26952602-26952634)
chr3 (103-135)||(37333177-37333209)
[»] scaffold0001 (1 HSPs)
scaffold0001 (74-142)||(428281-428349)
[»] scaffold0050 (1 HSPs)
scaffold0050 (16-117)||(34439-34542)
[»] chr8 (2 HSPs)
chr8 (27-71)||(18698938-18698982)
chr8 (18-71)||(3779700-3779754)
[»] scaffold0166 (1 HSPs)
scaffold0166 (47-140)||(7663-7758)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 43407268 - 43407449
Alignment:
Q  27 gagggtgcttacatgaccacccttctctataaacaccaaacatttctctccacaacgtggtgcttatttattcagatgctaaataggtgaagcacccgcc 126  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||    
T  43407268 gagggtgcttacatggccacccttctctataaacaccaaacatttctctccacaacgggatgcttatttattcaggtgctaaataggtgaagcacccacc 43407367  T
Q  127 attgtggatgctcttataataaaacagtgtatcaannnnnnnncc-ccatgaataattttctattgggaaaaacctaagtcc 207  Q
    |||||||||||||||||||||||| ||||||||||        || | |||||||||| |||||||||||||||||||||||    
T  43407368 attgtggatgctcttataataaaatagtgtatcaattttttttccgcgatgaataattctctattgggaaaaacctaagtcc 43407449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 229911 - 229784
Alignment:
Q  16 attaaagagag-gagggtgcttacatgaccacccttctctataaacaccaaacat-ttctctccacaacgtgg-tgcttatttattcagatgctaaatag 112  Q
    ||||||||||| ||||||||||| || ||||||||||||||||| |||||||||  |||||||||||| | || |||||||| |||  | | ||||||||    
T  229911 attaaagagagagagggtgcttatataaccacccttctctataagcaccaaacacattctctccacaaggagggtgcttattaatttcggtactaaatag 229812  T
Q  113 gtgaagcacccgccattgtggatgctct 140  Q
    ||||||||||| ||||||||||||||||    
T  229811 gtgaagcacccaccattgtggatgctct 229784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 48085499 - 48085404
Alignment:
Q  49 ttctctataaacaccaaacattt-ctctccacaacgt-ggtgcttatttattcagatgctaaataggtgaagcacccgccattgtggatgctctta 142  Q
    |||||||||| |||||||||||| |||||||||| |  |||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||    
T  48085499 ttctctataagcaccaaacattttctctccacaatgaaggtgcttattaattccggtgctaaataggtgaagcacccaccattgtggatgctctta 48085404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 23125951 - 23126065
Alignment:
Q  27 gagggtgcttacat-gaccacccttctctataaacaccaaacat-ttctctccacaacgtgg-tgcttatttattcagatgctaaataggtgaagcaccc 123  Q
    ||||||||||| || | |||||| ||||||||| |||||||||| |||||| ||||| | || || ||||| ||||   |||||||||| ||||||||||    
T  23125951 gagggtgcttatatagcccacccatctctataagcaccaaacatcttctcttcacaatgagggtgtttattaattcttgtgctaaatagatgaagcaccc 23126050  T
Q  124 gccattgtggatgct 138  Q
     ||||||||||||||    
T  23126051 accattgtggatgct 23126065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 36233877 - 36233753
Alignment:
Q  16 attaaagagag-gagggtgcttacatgaccacccttctctataaacaccaaacattt-ctctccacaacgtgg-tgcttatttattcagatgctaaatag 112  Q
    ||||||||||| | ||||||||| ||  ||||| |||||||||| |||||||||||| ||||||| || | || |||||||| |||    ||||||||||    
T  36233877 attaaagagagtgggggtgcttatatagccaccattctctataagcaccaaacattttctctccataatgagggtgcttattaatttttgtgctaaatag 36233778  T
Q  113 gtgaagcacccgccattgtggatgc 137  Q
    || |||||||| ||||||| |||||    
T  36233777 gttaagcacccaccattgttgatgc 36233753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 16529865 - 16529832
Alignment:
Q  103 tgctaaataggtgaagcacccgccattgtggatg 136  Q
    ||||||||||||||||||||| ||||||||||||    
T  16529865 tgctaaataggtgaagcacccaccattgtggatg 16529832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 32406974 - 32406858
Alignment:
Q  29 gggtgcttacatgaccaccctt-ctctataaacaccaaacattt-ctctccacaacgtgg-tgcttatttattcagatgctaaataggtgaagcacccgc 125  Q
    ||||||||| ||  |||||||| |||||||| |||||||||||| || || |||||| || |||||||| |||| | ||||||||||||||||||||| |    
T  32406974 gggtgcttatatagccaccctttctctataagcaccaaacattttctttcaacaacgagggtgcttattaattccggtgctaaataggtgaagcacccac 32406875  T
Q  126 cattgtggatgctctta 142  Q
    |||||||||||||||||    
T  32406874 cattgtggatgctctta 32406858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 43994337 - 43994210
Alignment:
Q  16 attaaagagag-gagggtgcttacatgaccacccttctctataaacaccaaacattt-ctctccacaacgtgg-tgcttatttattcagatgctaaatag 112  Q
    ||||||||||| ||||||||||| ||  ||||||||||||||||  ||||||||||| ||||| |||||| || |||||||| |||  | |||||||||     
T  43994337 attaaagagagagagggtgcttatatagccacccttctctataagtaccaaacattttctctctacaacgagggtgcttattaatttcggtgctaaataa 43994238  T
Q  113 gtgaagcacccgccattgtggatgctct 140  Q
    ||||||||||| ||||| ||||||||||    
T  43994237 gtgaagcacccaccattatggatgctct 43994210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 16870310 - 16870424
Alignment:
Q  27 gagggtgcttacatgaccacccttctctataaacaccaaacatttctctccacaacgtggtgcttatttattcagatgctaaataggtgaagcacccgcc 126  Q
    ||||||||||| ||  ||| |||||||||||| |||||||||||| |||  |||    |||||||||| |||| |||| ||||||||||||| |||| ||    
T  16870310 gagggtgcttatatagccatccttctctataagcaccaaacattt-tcttaacatgagggtgcttattaattccgatgttaaataggtgaagtacccacc 16870408  T
Q  127 attgtggatgctctta 142  Q
     |||||||||||||||    
T  16870409 tttgtggatgctctta 16870424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 15736024 - 15735980
Alignment:
Q  27 gagggtgcttacatgaccacccttctctataaacaccaaacattt 71  Q
    ||||||||||| || ||||||||||||||||| ||||||||||||    
T  15736024 gagggtgcttatataaccacccttctctataagcaccaaacattt 15735980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 36005855 - 36005781
Alignment:
Q  69 tttctctccacaacgtgg-tgcttatttattcagatgctaaataggtgaagcacccgccattgtggatgctctta 142  Q
    ||||||||||||||| || |||||||| |||| | | |||||||||| || ||||| ||||| ||||||||||||    
T  36005855 tttctctccacaacgagggtgcttattaattccggtactaaataggtaaaacacccaccattatggatgctctta 36005781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 6190236 - 6190276
Alignment:
Q  101 gatgctaaataggtgaagcacccgccattgtggatgctctt 141  Q
    ||||||||| ||||||||||||| |||||||||||| ||||    
T  6190236 gatgctaaacaggtgaagcacccaccattgtggatggtctt 6190276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 6606009 - 6605910
Alignment:
Q  43 ccacccttctctataaacaccaaacattt-ctctccacaacgtgg-tgcttatttattcagatgctaaataggtgaagcacccgccattgtggatgctct 140  Q
    |||||||||||||||| |||||||||||| |||||||||| | || |||||||| |||| | |||||||||||||||| |||| ||||| ||||||||||    
T  6606009 ccacccttctctataagcaccaaacattttctctccacaatgagggtgcttattaattccggtgctaaataggtgaagtacccaccattatggatgctct 6605910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 27740565 - 27740434
Alignment:
Q  10 aaaaatattaaagagag-gagggtgcttacatgaccacccttctctataaacaccaaacattt-ctctccacaacgtgg-tgcttatttattcagatgct 106  Q
    ||||| ||||||||||| ||||||||||| ||  |||||||||||||||| ||||||| |||| |||||||||| |  | |||||||| |||| | ||||    
T  27740565 aaaaaaattaaagagagagagggtgcttatatagccacccttctctataagcaccaaatattttctctccacaatgaagatgcttattaattctggtgct 27740466  T
Q  107 aaataggtgaagcacccgccattgtggatgct 138  Q
    ||||||||||| ||||| ||||||| ||||||    
T  27740465 aaataggtgaaacacccaccattgttgatgct 27740434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 4248926 - 4249053
Alignment:
Q  16 attaaagagaggagggtgcttacatgaccacccttctctataaacaccaaacattt-ctctccacaacgtgg-tgcttatttattcagatgctaaatagg 113  Q
    ||||||||||| |||| ||||| || ||||||||||||  ||| |||||||||||| |||||||||| | || | |||| | |||  | |||||||||||    
T  4248926 attaaagagag-agggagcttatataaccacccttctccgtaagcaccaaacattttctctccacaatgagggtacttactaatttcggtgctaaatagg 4249024  T
Q  114 tgaagcacccgccattgtggatgctctta 142  Q
    |||||||||| |||||||| |||||||||    
T  4249025 tgaagcacccaccattgtgaatgctctta 4249053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 14099695 - 14099815
Alignment:
Q  16 attaaagagag-gagggtgcttacatgaccacccttctctataaacaccaaacattt-ctctccacaacgtgg-tgcttatttattcagatgctaaatag 112  Q
    ||||||||||| ||||||||||| ||   |||| |||| ||||| ||||||| |||| |||||||||| | || |||||||| |||| | ||||||||||    
T  14099695 attaaagagagagagggtgcttatatagtcacctttctatataagcaccaaatattttctctccacaatgagggtgcttattaattccggtgctaaatag 14099794  T
Q  113 gtgaagcacccgccattgtgg 133  Q
    ||||||||||| |||||||||    
T  14099795 gtgaagcacccaccattgtgg 14099815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 52575511 - 52575400
Alignment:
Q  27 gagggtgcttacatgaccacccttctctataaacaccaaacattt-ctctccacaacgtggt-gcttatttattcagatgctaaataggtgaagcacccg 124  Q
    ||||||||||| ||  |||||||||||||||| ||||||| |||| |||||||||| | ||  ||||||| ||||   |||||||||||| ||||||||     
T  52575511 gagggtgcttatatagccacccttctctataagcaccaaatattttctctccacaatgaggaagcttattaattccagtgctaaataggtaaagcaccca 52575412  T
Q  125 ccattgtggatg 136  Q
    ||||||||||||    
T  52575411 ccattgtggatg 52575400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 12268317 - 12268405
Alignment:
Q  43 ccacccttctctataaacaccaaaca-tttctctccacaacg-tggtgcttatttattcagatgctaaataggtgaagcacccgccatt 129  Q
    |||||||||||||||| ||||||||| ||||||||||||| |  |||||||||| |||| | ||||||||||||||  ||||| |||||    
T  12268317 ccacccttctctataagcaccaaacattttctctccacaatgagggtgcttattaattccggtgctaaataggtgatacacccaccatt 12268405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 29636265 - 29636185
Alignment:
Q  60 caccaaacattt-ctctccacaacgt-ggtgcttatttattcagatgctaaataggtgaagcacccgccattgtggatgct 138  Q
    |||||||||||| |||||||||| |  |||||||||| |||| ||| ||||||||||||||||||| ||||| ||||||||    
T  29636265 caccaaacattttctctccacaatgaaggtgcttattaattccgatactaaataggtgaagcacccaccattatggatgct 29636185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 15728182 - 15728127
Alignment:
Q  27 gagggtgcttacatgaccacccttctctataaacaccaaaca-tttctctccacaa 81  Q
    ||||||||||||||  ||||| |||||||||| ||||||||| |||||||||||||    
T  15728182 gagggtgcttacatagccaccattctctataagcaccaaacattttctctccacaa 15728127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 15342891 - 15342953
Alignment:
Q  74 ctccacaacgtggtgcttatttattcagatgctaaataggtgaagcacccgccattgtggatg 136  Q
    |||||||| | |||||||||||| |  | ||||||||||||||||||||| ||||||| ||||    
T  15342891 ctccacaatggggtgcttatttaatgtggtgctaaataggtgaagcacccaccattgtagatg 15342953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 48379509 - 48379476
Alignment:
Q  103 tgctaaataggtgaagcacccgccattgtggatg 136  Q
    ||||||||||||||||||||| ||||||||||||    
T  48379509 tgctaaataggtgaagcacccaccattgtggatg 48379476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 9694109 - 9694177
Alignment:
Q  74 ctccacaacgtggtgcttatttattcagatgctaaataggtgaagcacccgccattgtggatgctctta 142  Q
    |||||||| | ||||| |||||| |  | ||||||||||||||||||||| ||||| |||||| |||||    
T  9694109 ctccacaatggggtgcctatttagtatggtgctaaataggtgaagcacccaccattttggatgttctta 9694177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 37145889 - 37146025
Alignment:
Q  11 aaaatattaaagagag-gagggtgcttacatgaccacccttctctat--aaacaccaaacattt-ctctccacaacg-tggtgcttatttattcagatgc 105  Q
    |||| ||||||||||| |||||| |||| || |||||| |||||| |  || |||||||||||| |||||||||| | ||||||||||| |||| | |||    
T  37145889 aaaaaattaaagagagagagggtacttatataaccaccattctctctgtaagcaccaaacattttctctccacaatgatggtgcttattaattccggtgc 37145988  T
Q  106 taaataggtgaagcacccgccattgtggatgctctta 142  Q
    |||||||||||||||| | ||||||| ||||||||||    
T  37145989 taaataggtgaagcactcaccattgtagatgctctta 37146025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 33531037 - 33530923
Alignment:
Q  27 gagggtgcttacatgaccacccttctctataaacaccaaacatttctctccacaacgtggtgcttatttattcagatgctaaataggtgaagcacccgcc 126  Q
    ||||||||||| ||  ||| |||||||||||| |||||||||||| |||  |||    |||||||||| |||| |||| ||||||||||||| |||| ||    
T  33531037 gagggtgcttatatagccatccttctctataagcaccaaacattt-tcttaacatgagggtgcttattaattccgatgttaaataggtgaagtacccacc 33530939  T
Q  127 attgtggatgctctta 142  Q
     |||||||||||||||    
T  33530938 tttgtggatgctctta 33530923  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 14126167 - 14126296
Alignment:
Q  16 attaaagagag-gagggtgcttacatgaccacccttctctataaacaccaaaca-tttctctccacaacg-tggtgcttatttattcagatgctaaatag 112  Q
    ||||||||||| ||||| ||||| ||  ||||||||||||||||||| | |||| ||||||||||||| |  |||| ||||| ||||   ||||||||||    
T  14126167 attaaagagagagagggagcttatatagccacccttctctataaacatctaacattttctctccacaatgaaggtgtttattaattcttgtgctaaatag 14126266  T
Q  113 gtgaagcacccgccattgtggatgctctta 142  Q
     |||||||||| | ||||||||| ||||||    
T  14126267 atgaagcacccactattgtggatactctta 14126296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 23418850 - 23418752
Alignment:
Q  44 cacccttctctataaacaccaaacattt-ctctccacaac-gtggtgcttatttattcagatgctaaataggtgaagcacccgccattgtggatgctct 140  Q
    |||| |||||||||||| |||||||||| ||||||| ||  | ||||||||||||| | || | ||| |||||||||||||| ||||||| ||||||||    
T  23418850 caccattctctataaactccaaacattttctctccaaaataggggtgcttatttataccgacgttaactaggtgaagcacccaccattgtagatgctct 23418752  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 19279466 - 19279425
Alignment:
Q  101 gatgctaaataggtgaagcacccgccattgtggatgctctta 142  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  19279466 gatgctaaataggtgaagcacccaccattgtggatggtctta 19279425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 9622440 - 9622479
Alignment:
Q  103 tgctaaataggtgaagcacccgccattgtggatgctctta 142  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  9622440 tgctaaataggtgaagcacccaccattgtggatggtctta 9622479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 24765166 - 24765261
Alignment:
Q  47 ccttctctataaacaccaaacattt-ctctccacaacgtgg-tgcttatttattcagatgctaaataggtgaagcacccgccattgtggatgctct 140  Q
    |||||||||||| |||||||||||| |||||||||| | || | ||| || |||| | || |||||| ||||||||||| ||||||| ||||||||    
T  24765166 ccttctctataagcaccaaacattttctctccacaatgagggtactttttaattccggtgttaaatatgtgaagcacccaccattgtagatgctct 24765261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 9907191 - 9907318
Alignment:
Q  16 attaaagagag-gagggtgcttacatgaccacccttctctataaacaccaaaca-tttctctccacaacgtgg-tgcttatttattcagatgctaaatag 112  Q
    ||||||||||| ||||||||||| || | ||||||||||||||| ||||||||| ||| ||||||||| | || |||||||   ||| | ||||||||||    
T  9907191 attaaagagagagagggtgcttatataatcacccttctctataagcaccaaacattttatctccacaatgaggatgcttatcacttccggtgctaaatag 9907290  T
Q  113 gtgaagcacccgccattgtggatgctct 140  Q
     |||||||||  ||||||||||||||||    
T  9907291 atgaagcaccaaccattgtggatgctct 9907318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 2472976 - 2472861
Alignment:
Q  30 ggtgcttacatgaccacccttctctataaacaccaaacatttc-tctccacaacgtgg-tgcttatttattcagatgctaaataggtgaagcacccgcca 127  Q
    |||||||| || | ||||||||||||||| ||||||| ||||  ||||||||| | || ||  |||| |||  | ||||||||||||||||||||| |||    
T  2472976 ggtgcttatataatcacccttctctataagcaccaaatattttgtctccacaatgagggtggatattaatttcggtgctaaataggtgaagcacccacca 2472877  T
Q  128 ttgtggatgctcttat 143  Q
    || |||||||||||||    
T  2472876 ttatggatgctcttat 2472861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 31115247 - 31115149
Alignment:
Q  44 cacccttctctataaacaccaaacat-ttctctccacaacgtg-gtgcttatttattcagatgctaaataggtgaagcacccgccattgtggatgctct 140  Q
    ||||||||||||||  |||||||||| ||||||||||||   | |||||||||||||| | ||||||||||||||| ||||  | ||||| ||||||||    
T  31115247 cacccttctctatatgcaccaaacatcttctctccacaataggagtgcttatttattccggtgctaaataggtgaaacacctactattgtagatgctct 31115149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 16706702 - 16706763
Alignment:
Q  74 ctccacaacgtggtgcttatttattcagatgctaaataggtgaagcacccgccattgtggat 135  Q
    |||||||| | ||||| |||||| |  | ||||||||||||||||||||| |||||||||||    
T  16706702 ctccacaatggggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggat 16706763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 17680938 - 17680999
Alignment:
Q  74 ctccacaacgtggtgcttatttattcagatgctaaataggtgaagcacccgccattgtggat 135  Q
    |||||||| | ||||| |||||| |  | ||||||||||||||||||||| |||||||||||    
T  17680938 ctccacaatggggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggat 17680999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 1765735 - 1765618
Alignment:
Q  16 attaaagagag-gagggtgcttacatgaccacccttctctataaacaccaaacattt-ctctccacaacgtgg-tgcttatttattcagatgctaaatag 112  Q
    ||||||||||| ||||||||||  || |||||||||||||||||  | ||||||||| ||||||||||   || |||||||| |||| | ||||||||||    
T  1765735 attaaagagagagagggtgcttctataaccacccttctctataagtatcaaacattttctctccacaataaggatgcttattaattccggtgctaaatag 1765636  T
Q  113 gtgaagcacccgccattg 130  Q
    ||||||||||| ||||||    
T  1765635 gtgaagcacccaccattg 1765618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 26952602 - 26952634
Alignment:
Q  103 tgctaaataggtgaagcacccgccattgtggat 135  Q
    ||||||||||||||||||||| |||||||||||    
T  26952602 tgctaaataggtgaagcacccaccattgtggat 26952634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 37333209 - 37333177
Alignment:
Q  103 tgctaaataggtgaagcacccgccattgtggat 135  Q
    ||||||||||||||||||||| |||||||||||    
T  37333209 tgctaaataggtgaagcacccaccattgtggat 37333177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 428349 - 428281
Alignment:
Q  74 ctccacaacgtggtgcttatttattcagatgctaaataggtgaagcacccgccattgtggatgctctta 142  Q
    |||||||| | ||||| |||||| || | ||||||||||||||||||||| |||||||||||| |||||    
T  428349 ctccacaatggggtgcctatttaatctggtgctaaataggtgaagcacccaccattgtggatggtctta 428281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 34439 - 34542
Alignment:
Q  16 attaaagagag-gagggtgcttacatgaccacccttctctataaacaccaaacattt-ctctccacaacgtggtgcttatttattcagatgctaaatagg 113  Q
    ||||||||||| || |||||||| ||  |||||||||||||||| || |||| |||| |||||||||| | ||||||| ||||||| | |||||| ||||    
T  34439 attaaagagagagatggtgcttatatagccacccttctctataagcatcaaatattttctctccacaatggggtgcttgtttattccggtgctaattagg 34538  T
Q  114 tgaa 117  Q
    ||||    
T  34539 tgaa 34542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 18698982 - 18698938
Alignment:
Q  27 gagggtgcttacatgaccacccttctctataaacaccaaacattt 71  Q
    ||||||||||| || ||||||||||||||||| ||||||||||||    
T  18698982 gagggtgcttatataaccacccttctctataagcaccaaacattt 18698938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 3779754 - 3779700
Alignment:
Q  18 taaagagagg-agggtgcttacatgaccacccttctctataaacaccaaacattt 71  Q
    |||||||||| ||||||| ||||| | ||||||||||||||| ||||||||||||    
T  3779754 taaagagagggagggtgcatacataatcacccttctctataagcaccaaacattt 3779700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 7663 - 7758
Alignment:
Q  47 ccttctctataaacaccaaacattt-ctctccacaacgtgg-tgcttatttattcagatgctaaataggtgaagcacccgccattgtggatgctct 140  Q
    |||||||||||| |||||||||||| |||||||||| | || | ||| || |||| | || |||||| ||||||||||| ||||||| ||||||||    
T  7663 ccttctctataagcaccaaacattttctctccacaatgagggtactttttaattccggtgttaaatatgtgaagcacccaccattgtagatgctct 7758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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