View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_6 (Length: 499)
Name: NF13978_low_6
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 51 - 484
Target Start/End: Original strand, 29449229 - 29449653
Alignment:
| Q |
51 |
ccaacagaaataggtacatgacgtggcaggttattattgataagagcaatgatacatggacattcggcccatgcacgtgactagctaatttgttgagttt |
150 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29449229 |
ccaacagaaataggtacatgacgtggcaggttattattgataagagcaatgatacatggacattcggcccatg----tgactagctaatttgttgagttt |
29449324 |
T |
|
| Q |
151 |
acttatatgatattcatgtgnnnnnnnnnacaaggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtg |
250 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29449325 |
acttatatgatattcatgtgtttttttt-acaaggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtg |
29449423 |
T |
|
| Q |
251 |
aagctgaaaacgaatgctcaaattgtttctagtggtttgtgggaaggattgaattgataaggaatgtagctccacccatttgtatctcacttctggaatg |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29449424 |
aagctgaaaacgaatgctcaaattgtttctagtggtttgtgggaaggattgaattgataaggaatgtagctccacccatttgtatctcacttctggaatg |
29449523 |
T |
|
| Q |
351 |
gtgtgacatatatcacacttctctcttgtgtaaaaatctcacacgaggggatccattccccatggaattgtgaatggggatgacctttggtgaaagaaaa |
450 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29449524 |
gtgtgac----atcacacttctctcttgtgtaaaaatctcacacgaggggatccattccccgtggaattgtgaatggggatgacctttggtgaaagaaaa |
29449619 |
T |
|
| Q |
451 |
ggccaacagaagtgtgacaaagatctcatctgtg |
484 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
29449620 |
ggccaatagaagtgtgacaaagatctcatctgtg |
29449653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 286 - 478
Target Start/End: Original strand, 29462304 - 29462490
Alignment:
| Q |
286 |
tttgtgggaaggattgaattgataaggaatgtagctccacccatttgtatctcacttctggaatggtgtgacatatatcacacttctctcttgtgtaaaa |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| |||||| || |||||||||| |||||||| |
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| T |
29462304 |
tttgtgggaaggattgaattgataaggaatgtagctccacacatttgtatctctcttctgaaatggtatgacat----ca-acttctctctcgtgtaaaa |
29462398 |
T |
|
| Q |
386 |
atctcacacgaggggatccattccccatggaattgtgaatggggatgacctttggtgaaagaaaaggccaacagaagtgtgacaaagatctca |
478 |
Q |
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| T |
29462399 |
atctcacatgaggggatccgtttccggtggaattatgaatggggatgacctatggtgaaag-aaaggcctacaaaagtgtgacaaagatctca |
29462490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 29462215 - 29462283
Alignment:
| Q |
215 |
acattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttctagt |
283 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| ||| |||| | ||||||||| ||||||||||| |
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|
| T |
29462215 |
acattgtaagggaatgaaagaagaaccaatgatgtgtagcagaaaccaaatgctcaagttgtttctagt |
29462283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 29444247 - 29444321
Alignment:
| Q |
184 |
ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa |
258 |
Q |
| |
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|||| ||||||||| ||||||||||||| || |||||||||||||||| |||||||| ||||| | ||||||| |
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| T |
29444247 |
ggataacttcttgtcccaaggatttaaactgaaattgtaagggagtgaaggaagaacctttgatgcgtagctgaa |
29444321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 29454254 - 29454328
Alignment:
| Q |
184 |
ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa |
258 |
Q |
| |
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|||||||||||||| || ||||||||||| || ||||||| |||||||| |||||| | ||||||| ||||||| |
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| T |
29454254 |
ggatgacttcttgtcccgaggatttaaattgaaattgtaatggagtgaaggaagaatctttgatgtgtagctgaa |
29454328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 184 - 478
Target Start/End: Complemental strand, 9363762 - 9363451
Alignment:
| Q |
184 |
ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttctag- |
282 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||||||||||||||| |||||||||| |||||| ||||||| || || ||||| ||||||||| |
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| T |
9363762 |
ggatgacttcttgtcccaaggatttaaattgtcattgtaagggagtgatagaagaaccagggatgtgtagctgaagccggatactcaagttgtttctaag |
9363663 |
T |
|
| Q |
283 |
------------------tggtttgtgggaaggattgaattgataaggaatgtagctccacccatttgtatctcacttctggaatggtgtgacatatatc |
364 |
Q |
| |
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| T |
9363662 |
cgacggaatgagtcaccttggttagcgggaagagttgaattgataaggaatgtagctccatccatttgtatctctcttcttgagtggtgtgacac----c |
9363567 |
T |
|
| Q |
365 |
acacttctctcttgtgtaaaaatctcacacgaggggatccattccc-----catggaattgtgaatggggatgacctttggtgaaagaaaaggccaacag |
459 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||||||||||||||| || |||| ||||||||||||||||| ||||| ||| ||||||| || | |
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| T |
9363566 |
acacttctctcatgt--aaaaatctcacatgaggggatccattcccggtggaatcgaatcgtgaatggggatgacctatggtggaag-aaaggcctactg |
9363470 |
T |
|
| Q |
460 |
aagtgtgacaaagatctca |
478 |
Q |
| |
|
||||| |||||||||||| |
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| T |
9363469 |
aagtgccacaaagatctca |
9363451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 12019793 - 12019867
Alignment:
| Q |
184 |
ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa |
258 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||||||||||| |||||| | ||||||| ||||||| |
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|
| T |
12019793 |
ggatgacttcttgtccaaaggatttaaattgacattgtaagggagtgaaggaagaatcgttgatgtgtagctgaa |
12019867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 11988326 - 11988400
Alignment:
| Q |
184 |
ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa |
258 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| || |||| ||||||| |
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|
| T |
11988326 |
ggatgacttcttgtcaaaaggatttaaattgacattgtaagggagtgaaggaagaacctttgttgtgtagctgaa |
11988400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 12007150 - 12007220
Alignment:
| Q |
188 |
gacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa |
258 |
Q |
| |
|
|||||| ||| || ||||||||||| ||| ||||||||||||||| |||||||| | ||||| ||||||| |
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|
| T |
12007150 |
gacttcctgtcccgaggatttaaattgaccttgtaagggagtgaaggaagaacctgttatgtgtagctgaa |
12007220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 9069069 - 9069117
Alignment:
| Q |
283 |
tggtttgtgggaaggattgaattgataaggaatgtagctccacccattt |
331 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||| |||| ||||||||| |
|
|
| T |
9069069 |
tggtttgtgggaaaggttgaattgataaagaatgaagctgcacccattt |
9069117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 9287882 - 9287782
Alignment:
| Q |
180 |
acaaggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttc |
279 |
Q |
| |
|
||||||| ||||| |||| || ||||||||||| || ||||||||||| || |||| ||| ||||||| |||||||| | |||||||| ||||||| |
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| T |
9287882 |
acaaggacgactttttgtcccgaggatttaaattgagattgtaagggatggatggaagtacctgtgatgtgcagctgaaacaggatgctcaagttgtttc |
9287783 |
T |
|
| Q |
280 |
t |
280 |
Q |
| |
|
| |
|
|
| T |
9287782 |
t |
9287782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 41968300 - 41968397
Alignment:
| Q |
184 |
ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaac-gaatgctcaaattgtttct |
280 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||||| ||| |||| ||| ||||||| |||||||| | | |||||||| |||||||| |
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|
| T |
41968300 |
ggatgacttcttgtcccaaggatttaaattgagattgtaagggatggaaggaaggacctgtgatgtgcagctgaaaccaggatgctcaagttgtttct |
41968397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 45242715 - 45242651
Alignment:
| Q |
183 |
aggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgat |
247 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||||| ||| ||| || ||||||||| |||| |
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|
| T |
45242715 |
aggatgacttcttgttccagggatttaaattgacattgaaagagagccaaggaagaaccagtgat |
45242651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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