View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13978_low_63 (Length: 204)

Name: NF13978_low_63
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13978_low_63
NF13978_low_63
[»] chr3 (16 HSPs)
chr3 (39-141)||(4216278-4216381)
chr3 (140-177)||(1830351-1830388)
chr3 (140-179)||(20691325-20691364)
chr3 (140-183)||(25074791-25074834)
chr3 (141-179)||(21149073-21149111)
chr3 (140-178)||(25892467-25892505)
chr3 (144-179)||(16789668-16789703)
chr3 (140-178)||(3730179-3730217)
chr3 (142-179)||(34189433-34189470)
chr3 (144-176)||(4469859-4469891)
chr3 (143-183)||(13799506-13799546)
chr3 (143-183)||(16192767-16192807)
chr3 (143-179)||(24205058-24205094)
chr3 (141-177)||(30367634-30367670)
chr3 (141-177)||(32134267-32134303)
chr3 (140-180)||(40150585-40150625)
[»] chr2 (22 HSPs)
chr2 (138-183)||(30298459-30298504)
chr2 (140-183)||(10535773-10535816)
chr2 (140-182)||(31026698-31026740)
chr2 (143-183)||(19573980-19574020)
chr2 (140-183)||(4229422-4229465)
chr2 (140-183)||(18570974-18571017)
chr2 (141-183)||(16630797-16630839)
chr2 (140-178)||(22085011-22085049)
chr2 (143-183)||(40681984-40682024)
chr2 (140-183)||(8817470-8817513)
chr2 (140-179)||(12748690-12748729)
chr2 (143-178)||(12933753-12933788)
chr2 (140-175)||(17520084-17520119)
chr2 (140-179)||(24011042-24011081)
chr2 (140-179)||(34007005-34007044)
chr2 (140-183)||(44776601-44776644)
chr2 (140-178)||(25544488-25544526)
chr2 (141-181)||(13501093-13501133)
chr2 (152-180)||(18622420-18622448)
chr2 (143-183)||(21091725-21091765)
chr2 (143-183)||(21616764-21616804)
chr2 (143-183)||(31808079-31808119)
[»] chr8 (15 HSPs)
chr8 (143-183)||(33382036-33382076)
chr8 (140-183)||(40063953-40063996)
chr8 (143-177)||(4786355-4786389)
chr8 (143-177)||(11803267-11803301)
chr8 (140-178)||(28883892-28883930)
chr8 (140-177)||(12559120-12559157)
chr8 (140-177)||(29198493-29198530)
chr8 (142-179)||(30068044-30068081)
chr8 (143-183)||(4611536-4611576)
chr8 (140-180)||(9936819-9936859)
chr8 (138-182)||(12606649-12606693)
chr8 (140-176)||(16869729-16869765)
chr8 (143-183)||(34897087-34897127)
chr8 (143-179)||(43551878-43551914)
chr8 (143-179)||(44067522-44067558)
[»] chr7 (17 HSPs)
chr7 (143-179)||(12278841-12278877)
chr7 (140-183)||(38134420-38134463)
chr7 (140-175)||(7133292-7133327)
chr7 (140-179)||(23930225-23930264)
chr7 (143-177)||(27732256-27732290)
chr7 (141-179)||(44172905-44172943)
chr7 (138-179)||(21247748-21247789)
chr7 (138-183)||(29787381-29787426)
chr7 (143-183)||(8160418-8160458)
chr7 (151-179)||(17780109-17780137)
chr7 (143-179)||(18233615-18233651)
chr7 (141-177)||(18750884-18750920)
chr7 (143-183)||(27093430-27093470)
chr7 (143-183)||(27184831-27184871)
chr7 (141-185)||(31808524-31808568)
chr7 (143-183)||(32308122-32308162)
chr7 (143-179)||(43249999-43250035)
[»] chr5 (18 HSPs)
chr5 (143-179)||(18162061-18162097)
chr5 (140-183)||(2577194-2577237)
chr5 (140-183)||(4344744-4344787)
chr5 (139-182)||(11596468-11596511)
chr5 (140-177)||(31264446-31264483)
chr5 (140-183)||(19293437-19293480)
chr5 (140-183)||(28296330-28296373)
chr5 (140-183)||(43208288-43208331)
chr5 (140-182)||(2548390-2548432)
chr5 (140-182)||(26205774-26205816)
chr5 (138-183)||(2039861-2039906)
chr5 (138-179)||(2419863-2419904)
chr5 (143-192)||(38749580-38749629)
chr5 (145-177)||(6770551-6770583)
chr5 (143-183)||(21577125-21577165)
chr5 (143-179)||(24906318-24906354)
chr5 (143-183)||(27932237-27932277)
chr5 (143-183)||(28588691-28588731)
[»] chr6 (12 HSPs)
chr6 (140-179)||(34446571-34446610)
chr6 (143-183)||(9658881-9658921)
chr6 (143-183)||(32511683-32511723)
chr6 (140-179)||(12235533-12235572)
chr6 (143-182)||(18252768-18252807)
chr6 (140-179)||(19602195-19602234)
chr6 (138-183)||(31579237-31579282)
chr6 (143-183)||(7265610-7265650)
chr6 (143-179)||(7569185-7569221)
chr6 (143-183)||(19040354-19040394)
chr6 (138-178)||(29049892-29049932)
chr6 (151-183)||(32728369-32728401)
[»] chr4 (20 HSPs)
chr4 (140-183)||(7012068-7012111)
chr4 (140-183)||(18513255-18513298)
chr4 (140-179)||(20743292-20743331)
chr4 (140-178)||(31243562-31243600)
chr4 (138-183)||(34589718-34589763)
chr4 (140-192)||(5654605-5654657)
chr4 (143-179)||(32910557-32910593)
chr4 (140-183)||(7424672-7424715)
chr4 (140-179)||(10546154-10546193)
chr4 (140-183)||(14465308-14465351)
chr4 (144-179)||(34515892-34515927)
chr4 (147-178)||(53968553-53968584)
chr4 (139-177)||(17446079-17446117)
chr4 (143-184)||(903923-903964)
chr4 (140-180)||(30520450-30520491)
chr4 (143-183)||(8423735-8423775)
chr4 (140-184)||(17876156-17876200)
chr4 (143-183)||(22440617-22440657)
chr4 (143-179)||(24343513-24343549)
chr4 (140-176)||(46180950-46180986)
[»] chr1 (15 HSPs)
chr1 (140-183)||(19637770-19637813)
chr1 (144-183)||(42325562-42325601)
chr1 (140-182)||(21038086-21038128)
chr1 (143-183)||(5376517-5376557)
chr1 (139-178)||(3921674-3921713)
chr1 (140-179)||(7988465-7988504)
chr1 (140-179)||(42004961-42005000)
chr1 (149-179)||(29415754-29415784)
chr1 (142-179)||(11571591-11571628)
chr1 (138-178)||(2288179-2288219)
chr1 (140-179)||(21145472-21145512)
chr1 (143-183)||(24176384-24176424)
chr1 (143-183)||(26238129-26238169)
chr1 (143-183)||(36878463-36878503)
chr1 (143-179)||(40747790-40747826)
[»] scaffold0598 (1 HSPs)
scaffold0598 (144-179)||(8071-8106)
[»] scaffold0022 (1 HSPs)
scaffold0022 (143-192)||(99886-99935)
[»] scaffold0004 (1 HSPs)
scaffold0004 (143-183)||(92809-92849)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 3e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 4216278 - 4216381
Alignment:
Q  39 gttcataacttgaaatgaattcaaatctttgtaggacctacacttatgatcaaagatgtgtccagtgtctca-cgtgtaagtgtccaagtgtgacgcata 137  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| ||||| | ||||||||||||||| | ||| |||||    
T  4216278 gttcataacttgaaatgaattcaaatctttgtaggatcgacacttatgatcaaaggtgtgtccattgtcttagcgtgtaagtgtccaactctgatgcata 4216377  T
Q  138 acat 141  Q
    ||||    
T  4216378 acat 4216381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 1830388 - 1830351
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattatta 177  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1830388 atgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 20691364 - 20691325
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  20691364 atgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 25074834 - 25074791
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||| |||||||||||||||| |||||||||||||||    
T  25074834 atgattacactcaattatgtcattttctcaaattattatcggtg 25074791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 21149111 - 21149073
Alignment:
Q  141 tgattacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  21149111 tgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 25892505 - 25892467
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattat 178  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25892505 atgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 16789668 - 16789703
Alignment:
Q  144 ttacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||||| |||||||||||    
T  16789668 ttacactgaattatgtcattttctcaaattattatc 16789703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 3730179 - 3730217
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattat 178  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  3730179 atgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 34189470 - 34189433
Alignment:
Q  142 gattacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  34189470 gattacactgaaatatgtcattttctcaaattattatc 34189433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 4469891 - 4469859
Alignment:
Q  144 ttacactgaattatgtcattttcttaaattatt 176  Q
    |||||||||||||||| ||||||||||||||||    
T  4469891 ttacactgaattatgtgattttcttaaattatt 4469859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 13799546 - 13799506
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  13799546 attacacttaattatgtcattttctcaaactattatcggtg 13799506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 16192767 - 16192807
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  16192767 attacactgaattatgttattttctcaaattattaacggtg 16192807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 24205058 - 24205094
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  24205058 attacactgtattatgtcattttctcaaattattatc 24205094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 30367634 - 30367670
Alignment:
Q  141 tgattacactgaattatgtcattttcttaaattatta 177  Q
    |||||||| | ||||||||||||||||||||||||||    
T  30367634 tgattacattcaattatgtcattttcttaaattatta 30367670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 32134303 - 32134267
Alignment:
Q  141 tgattacactgaattatgtcattttcttaaattatta 177  Q
    |||||||||| |||||||||| |||||||||||||||    
T  32134303 tgattacactcaattatgtcactttcttaaattatta 32134267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 40150585 - 40150625
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcg 180  Q
    ||||||||| |||||||| ||||||||| ||||||||||||    
T  40150585 atgattacattgaattatatcattttctcaaattattatcg 40150625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 30298459 - 30298504
Alignment:
Q  138 acatgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  30298459 acatgattacactgaattatgtcattttattaaattattatcggtg 30298504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 10535773 - 10535816
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  10535773 atgattacactgaattatgtcattttctcaaattattatcggtg 10535816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 31026740 - 31026698
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggt 182  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  31026740 atgattacattgaattatgtcattttcttaaattattatcggt 31026698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 19574020 - 19573980
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  19574020 attacactgaattatgttattttcttaaattattatcggtg 19573980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 4229422 - 4229465
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  4229422 atgattacactgaattatgtcattctcttaaattattattggtg 4229465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 18571017 - 18570974
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  18571017 atgattacattgaattatgtcattttctcaaattattatcggtg 18570974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 16630839 - 16630797
Alignment:
Q  141 tgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  16630839 tgattaaattgaattatgtcattttcttaaattattatcggtg 16630797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 22085049 - 22085011
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattat 178  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  22085049 atgattacactaaattatgtcattttcttaaattattat 22085011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 40682024 - 40681984
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  40682024 attacattgaattatgtcattttctcaaattattatcggtg 40681984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 8817470 - 8817513
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  8817470 atgattacactgaattataccatgttcttaaattattatcggtg 8817513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 12748729 - 12748690
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  12748729 atgattacactgaactatgtcattttctcaaattattatc 12748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 12933753 - 12933788
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattat 178  Q
    |||||| |||||||||||||||||||||||||||||    
T  12933753 attacattgaattatgtcattttcttaaattattat 12933788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 17520084 - 17520119
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattat 175  Q
    |||||||||||||||||||| |||||||||||||||    
T  17520084 atgattacactgaattatgtgattttcttaaattat 17520119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 24011081 - 24011042
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  24011081 atgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 34007005 - 34007044
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  34007005 atgattacactgaattatgtcaatttctcaaattattatc 34007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 44776644 - 44776601
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||    
T  44776644 atgattacactgagttatgtcattttcataaattattgtcggtg 44776601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 25544526 - 25544488
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattat 178  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  25544526 atgattacactgaattatatcattttctcaaattattat 25544488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 13501093 - 13501133
Alignment:
Q  141 tgattacactgaattatgtcattttcttaaattattatcgg 181  Q
    |||||||| |||||||||||||||||||||| | |||||||    
T  13501093 tgattacattgaattatgtcattttcttaaaattttatcgg 13501133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 18622448 - 18622420
Alignment:
Q  152 aattatgtcattttcttaaattattatcg 180  Q
    |||||||||||||||||||||||||||||    
T  18622448 aattatgtcattttcttaaattattatcg 18622420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 21091765 - 21091725
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||| ||||| ||||||||||||||||| |||||    
T  21091765 attacactgaagtatgttattttcttaaattattagcggtg 21091725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 21616804 - 21616764
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  21616804 attacactgaattatgtgattttctcaaattattagcggtg 21616764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 31808119 - 31808079
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  31808119 attacactgaattatgtgattttgttaaattattagcggtg 31808079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 33382036 - 33382076
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  33382036 attactctgaattatgtcattttcttaaattattatcggtg 33382076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 40063996 - 40063953
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||    
T  40063996 atgattacaatgaattatgtcattttctcaaattattattggtg 40063953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 4786355 - 4786389
Alignment:
Q  143 attacactgaattatgtcattttcttaaattatta 177  Q
    ||||||||||||||||| |||||||||||||||||    
T  4786355 attacactgaattatgtgattttcttaaattatta 4786389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 11803301 - 11803267
Alignment:
Q  143 attacactgaattatgtcattttcttaaattatta 177  Q
    ||||||||||||||||| |||||||||||||||||    
T  11803301 attacactgaattatgtgattttcttaaattatta 11803267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 28883892 - 28883930
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattat 178  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  28883892 atgattccactgaattatgtcattttctcaaattattat 28883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 12559120 - 12559157
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattatta 177  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  12559120 atgattacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 29198493 - 29198530
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattatta 177  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  29198493 atgattacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 30068044 - 30068081
Alignment:
Q  142 gattacactgaattatgtcattttcttaaattattatc 179  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  30068044 gattatactgaattatgtcattttctcaaattattatc 30068081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 4611576 - 4611536
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  4611576 attacactgaattatgttattttctcaaattattagcggtg 4611536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 9936859 - 9936819
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcg 180  Q
    ||||||| | |||||||| ||||||||||||||||||||||    
T  9936859 atgattatattgaattatatcattttcttaaattattatcg 9936819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 12606693 - 12606649
Alignment:
Q  138 acatgattacactgaattatgtcattttcttaaattattatcggt 182  Q
    ||||||||||||  |||||||||| ||||||||||| ||||||||    
T  12606693 acatgattacacataattatgtcactttcttaaatttttatcggt 12606649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 16869729 - 16869765
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattatt 176  Q
    ||||||| | |||||||||||||||||||||||||||    
T  16869729 atgattatagtgaattatgtcattttcttaaattatt 16869765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 34897127 - 34897087
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  34897127 attacactgaattatgtgattttctcaaattattagcggtg 34897087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 43551878 - 43551914
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  43551878 attacaatgaattatgtcattttcgtaaattattatc 43551914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 44067558 - 44067522
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  44067558 attacactgtattatgtcattttctcaaattattatc 44067522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 12278877 - 12278841
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||||||||||||||||||    
T  12278877 attacactgaattatgtcattttcttaaattattatc 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 38134420 - 38134463
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  38134420 atgattacattgaattatgtcattttctcaaattattatcggtg 38134463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 7133292 - 7133327
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattat 175  Q
    |||||||||||||||||||||||||||| |||||||    
T  7133292 atgattacactgaattatgtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 23930264 - 23930225
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  23930264 atgattacactgaattatgtcattttctcaaattactatc 23930225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 27732256 - 27732290
Alignment:
Q  143 attacactgaattatgtcattttcttaaattatta 177  Q
    ||||||||||||||||| |||||||||||||||||    
T  27732256 attacactgaattatgtaattttcttaaattatta 27732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 44172905 - 44172943
Alignment:
Q  141 tgattacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  44172905 tgattacattgaattatgtcattttctcaaattattatc 44172943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 21247748 - 21247789
Alignment:
Q  138 acatgattacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||| ||||||| |||||||||| |||||||||||    
T  21247748 acatgattacattgaattacgtcattttctcaaattattatc 21247789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 29787381 - 29787426
Alignment:
Q  138 acatgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||| ||||||||||||||||| ||||||| ||||||||| |||||    
T  29787381 acataattacactgaattatgtgattttctcaaattattagcggtg 29787426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 8160458 - 8160418
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  8160458 attacactaaattatgtaattttcttaaattattagcggtg 8160418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 17780109 - 17780137
Alignment:
Q  151 gaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||||||||||    
T  17780109 gaattatgtcattttcttaaattattatc 17780137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 18233615 - 18233651
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  18233615 attacactgaattatgtcattttctcaaattactatc 18233651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 18750920 - 18750884
Alignment:
Q  141 tgattacactgaattatgtcattttcttaaattatta 177  Q
    |||||||| | ||||||||||||||||||||||||||    
T  18750920 tgattacattcaattatgtcattttcttaaattatta 18750884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 27093430 - 27093470
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  27093430 attacactaaattatgtgattttcttaaattattagcggtg 27093470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 27184871 - 27184831
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  27184871 attacactaaattatgtgattttcttaaattattagcggtg 27184831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 31808524 - 31808568
Alignment:
Q  141 tgattacactgaattatgtcattttcttaaattattatcggtgcg 185  Q
    |||||||| ||| || ||||||||||| |||||||||||||||||    
T  31808524 tgattacattgacttgtgtcattttctcaaattattatcggtgcg 31808568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 32308162 - 32308122
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  32308162 attacactgaattatgtgattttctcaaattattagcggtg 32308122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 43250035 - 43249999
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  43250035 attacactgtattatgtcattttctcaaattattatc 43249999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 18162097 - 18162061
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||||||||||||||||||    
T  18162097 attacactgaattatgtcattttcttaaattattatc 18162061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 2577194 - 2577237
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||| |||||||||||||||| |||||||||||||||    
T  2577194 atgattacactaaattatgtcattttctcaaattattatcggtg 2577237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 4344787 - 4344744
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  4344787 atgattacactgaattatgtcattttttcaaattattatcggtg 4344744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 11596468 - 11596511
Alignment:
Q  139 catgattacactgaattatgtcattttcttaaattattatcggt 182  Q
    |||||||||| |||||||||||||||||| ||||||||||||||    
T  11596468 catgattacattgaattatgtcattttctcaaattattatcggt 11596511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 31264483 - 31264446
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattatta 177  Q
    |||||||||||||||||||||||||||| |||||||||    
T  31264483 atgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 19293437 - 19293480
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||    
T  19293437 atgattacacttaattatgttattttcttaaattattattggtg 19293480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 28296373 - 28296330
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||| |||| |||||||||||||||||| |||||||||||||||    
T  28296373 atgagtacattgaattatgtcattttctcaaattattatcggtg 28296330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 43208288 - 43208331
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||    
T  43208288 atgattacattgaattatgtcattttctcaaattactatcggtg 43208331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 2548432 - 2548390
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggt 182  Q
    |||||||||||||||||||| |||||||  |||||||||||||    
T  2548432 atgattacactgaattatgtaattttctctaattattatcggt 2548390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 26205774 - 26205816
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggt 182  Q
    |||||||||||||||||||||||||||| ||| | ||||||||    
T  26205774 atgattacactgaattatgtcattttctcaaaattttatcggt 26205816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 2039861 - 2039906
Alignment:
Q  138 acatgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||| ||||| |||||||||||| ||||||||| |||||    
T  2039861 acatgattacattgaatcatgtcattttctcaaattattaccggtg 2039906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 2419904 - 2419863
Alignment:
Q  138 acatgattacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||| ||| ||||||| |||||||||||    
T  2419904 acatgattacactgaattgtgtaattttctcaaattattatc 2419863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 38749580 - 38749629
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtgcggacatgt 192  Q
    |||||| |||||||||||||||| | |||||||||||||||  |||||||    
T  38749580 attacattgaattatgtcattttttcaaattattatcggtgtcgacatgt 38749629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 6770583 - 6770551
Alignment:
Q  145 tacactgaattatgtcattttcttaaattatta 177  Q
    ||||||||||||||| |||||||||||||||||    
T  6770583 tacactgaattatgtgattttcttaaattatta 6770551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 21577125 - 21577165
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||| |||||||| ||||||| |||||||||||||||    
T  21577125 attacacttaattatgttattttctcaaattattatcggtg 21577165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 24906318 - 24906354
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||||||||||||||| | |||||||||||    
T  24906318 attacactgaattatgtcattttttcaaattattatc 24906354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 27932277 - 27932237
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  27932277 attacactgaattatgtaattttctcaaattattagcggtg 27932237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 28588691 - 28588731
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  28588691 attacactgaattatgtgattttctcaaattattaccggtg 28588731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 34446610 - 34446571
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  34446610 atgattacactgaattatgtcattttctcaaattattatc 34446571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 9658921 - 9658881
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  9658921 attacactgaattatgtgattttcttaaattattagcggtg 9658881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 32511683 - 32511723
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  32511683 attacactgaattatgtgattttcttaaattattagcggtg 32511723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 12235533 - 12235572
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  12235533 atgattacactgaattatgtcattttctctaattattatc 12235572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 18252768 - 18252807
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggt 182  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  18252768 attacactaaattatgtcatttttttaaattattatcggt 18252807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 19602195 - 19602234
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  19602195 atgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 31579237 - 31579282
Alignment:
Q  138 acatgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||| ||||||||||||||||| ||||||| ||||||||| |||||    
T  31579237 acataattacactgaattatgtgattttctcaaattattaacggtg 31579282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 7265610 - 7265650
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  7265610 attacactgaattatgtgattttctcaaattattagcggtg 7265650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 7569185 - 7569221
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  7569185 attacactgaattatgtaattttctcaaattattatc 7569221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 19040394 - 19040354
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  19040394 attacactgaattatgtgattttctcaaattattagcggtg 19040354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 29049932 - 29049892
Alignment:
Q  138 acatgattacactgaattatgtcattttcttaaattattat 178  Q
    ||||||||||| |||||||||| ||||||| ||||||||||    
T  29049932 acatgattacattgaattatgtaattttctcaaattattat 29049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 32728401 - 32728369
Alignment:
Q  151 gaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||||||||||||||| ||||||||||||    
T  32728401 gaattatgtcattttcttaatttattatcggtg 32728369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 7012111 - 7012068
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||| |||||||||||||||||||||| |||||||||||||||    
T  7012111 atgatcacactgaattatgtcattttctcaaattattatcggtg 7012068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 18513255 - 18513298
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  18513255 atgattacattgaattatgtcattttctcaaattattatcggtg 18513298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 20743292 - 20743331
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  20743292 atgattacactgaattatgtcattttctcaaattattatc 20743331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 31243562 - 31243600
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattat 178  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  31243562 atgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 34589718 - 34589763
Alignment:
Q  138 acatgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||    
T  34589718 acatgattacattgaattatgtcattttctcaaattgttatcggtg 34589763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 5654605 - 5654657
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtgcggacatgt 192  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||  |||||||    
T  5654605 atgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgt 5654657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 32910593 - 32910557
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||||||||||||||||| |||||||||||    
T  32910593 attacactgaattatgtcattttctcaaattattatc 32910557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 7424715 - 7424672
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||| |||||| | |||||||||||||||||||||||    
T  7424715 atgattacactcaattatattattttcttaaattattatcggtg 7424672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 10546193 - 10546154
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  10546193 atgattacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 14465308 - 14465351
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||| | |||||||||||||||||| |||||||||||||||    
T  14465308 atgattaaattgaattatgtcattttctcaaattattatcggtg 14465351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 34515892 - 34515927
Alignment:
Q  144 ttacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||||||||||||||||| ||||||||||    
T  34515892 ttacactgaattatgtcattttcttgaattattatc 34515927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 178
Target Start/End: Complemental strand, 53968584 - 53968553
Alignment:
Q  147 cactgaattatgtcattttcttaaattattat 178  Q
    ||||||||||||||||||||||||||||||||    
T  53968584 cactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 17446117 - 17446079
Alignment:
Q  139 catgattacactgaattatgtcattttcttaaattatta 177  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  17446117 catgattacactaaattatgtgattttcttaaattatta 17446079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 903964 - 903923
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtgc 184  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||    
T  903964 attacactgaattatgtgattttctcaaattattaacggtgc 903923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 30520450 - 30520491
Alignment:
Q  140 atgattacactgaattatgtcattttctt-aaattattatcg 180  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  30520450 atgattacactgaattatgtcatttttttcaaattattatcg 30520491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 8423735 - 8423775
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  8423735 attacactgaattatgtgattttctcaaattattagcggtg 8423775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 17876200 - 17876156
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtgc 184  Q
    ||||||||||| |||||||||||||||| |||||| |||| ||||    
T  17876200 atgattacactaaattatgtcattttctaaaattagtatcagtgc 17876156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 22440617 - 22440657
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  22440617 attacactgaattatgtgattttctcaaattattaacggtg 22440657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 24343549 - 24343513
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  24343549 attacactgaattatgtaattttctcaaattattatc 24343513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 46180950 - 46180986
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattatt 176  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  46180950 atgattacactgaattatgttattttctcaaattatt 46180986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 19637813 - 19637770
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||    
T  19637813 atgattacattgaataatgtcattttcttaaattattatcggtg 19637770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 42325601 - 42325562
Alignment:
Q  144 ttacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  42325601 ttacactgaattatgtcattttctcaaattattatcggtg 42325562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 21038128 - 21038086
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatcggt 182  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  21038128 atgattacactgaattatgtaattttcttaaattattagcggt 21038086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 5376517 - 5376557
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  5376517 attacactgaattatgttattttcttaaattattagcggtg 5376557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 3921713 - 3921674
Alignment:
Q  139 catgattacactgaattatgtcattttcttaaattattat 178  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  3921713 catgattacattgaattatgtcattttctcaaattattat 3921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 7988465 - 7988504
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  7988465 atgattacattgaattatgtcactttcttaaattattatc 7988504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 42004961 - 42005000
Alignment:
Q  140 atgattacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  42004961 atgattacactaaattatgtcattttctcaaattattatc 42005000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 179
Target Start/End: Complemental strand, 29415784 - 29415754
Alignment:
Q  149 ctgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||||||||||||    
T  29415784 ctgaattatgtcattttcttaaattattatc 29415754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 11571628 - 11571591
Alignment:
Q  142 gattacactgaattatgtcattttcttaaattattatc 179  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  11571628 gattacattgaattatgtcattttctcaaattattatc 11571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 2288179 - 2288219
Alignment:
Q  138 acatgattacactgaattatgtcattttcttaaattattat 178  Q
    |||| |||||| |||||||||| ||||||||||||||||||    
T  2288179 acataattacattgaattatgtgattttcttaaattattat 2288219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 21145512 - 21145472
Alignment:
Q  140 atgattacactgaattatgtcattttctt-aaattattatc 179  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  21145512 atgattacactgaattatgtcatttttttcaaattattatc 21145472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 24176384 - 24176424
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    |||||||||||| |||| ||||||| |||||||||||||||    
T  24176384 attacactgaatgatgttattttctcaaattattatcggtg 24176424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 26238129 - 26238169
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  26238129 attacactgaattatgttattttctcaaattattagcggtg 26238169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 36878503 - 36878463
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  36878503 attacactgaattatgtgattttctcaaattattagcggtg 36878463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 40747790 - 40747826
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatc 179  Q
    |||||| |||||||||||||||||| |||||||||||    
T  40747790 attacattgaattatgtcattttctcaaattattatc 40747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 8071 - 8106
Alignment:
Q  144 ttacactgaattatgtcattttcttaaattattatc 179  Q
    |||||||||||||||||||||||| |||||||||||    
T  8071 ttacactgaattatgtcattttctcaaattattatc 8106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 99935 - 99886
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtgcggacatgt 192  Q
    |||||| |||||||||| ||||||| |||||||||||||||  |||||||    
T  99935 attacattgaattatgttattttctaaaattattatcggtgtcgacatgt 99886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 92849 - 92809
Alignment:
Q  143 attacactgaattatgtcattttcttaaattattatcggtg 183  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  92849 attacactgaattatgtaattttctcaaattattagcggtg 92809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University