View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_7 (Length: 498)
Name: NF13978_low_7
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 41 - 479
Target Start/End: Original strand, 114113 - 114553
Alignment:
| Q |
41 |
caaaaagcaaattccattaattcatataaacttctaataacaagcaaagctaccattnnnnnnncttaaatatagttttaagtctctctattttgcttca |
140 |
Q |
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| T |
114113 |
caaaaagcaaattccattaattcatataaacttctaataacaagcaaagctaccattaaaaaaacttaaatatagttttaagtctctctattttgcttca |
114212 |
T |
|
| Q |
141 |
ttcaggatattggtcctattgtttcaaaatgtatggtcaattgaatcgatgatttgatactgtctaggtaaattttcatttcctatcatcaattcagttg |
240 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114213 |
ttcacgatattggtcctattgtttcaaaatgtatggtcaattgaatcaatgatttgatactgtctaggtaaattttcatttcctatcatcaattcagttg |
114312 |
T |
|
| Q |
241 |
ccgcataaccatttgccattggtggaaa--gtgtccgacattttgaaaatcgaaggaatcaaatcatagattcagacatggatggactaaaatagaaagt |
338 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
114313 |
ccgcataaccatttgccattggtggaaaaagtgtccgagattttgaaaatcgaaggaatcaaatcatagatttagacatggatggactaaaatagaaagt |
114412 |
T |
|
| Q |
339 |
tggttacctgtgagaaggagagtatgtgcttcccctgcagctacggcggttactttaaaaggtaagttgccggagcttgcaacattttccattatcgtcc |
438 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |
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| T |
114413 |
tggttacctgcgagaagaagagtatgtgcttcccctgcagctacggcggttactttaaaaggtaagttgccggagtttgcaacatcttccattattgtcc |
114512 |
T |
|
| Q |
439 |
acctgctctattaaattatgtacaatatgataagaatgtta |
479 |
Q |
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| T |
114513 |
acctgctctattaaattatgtacaatatgataagaaagtta |
114553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 114063 - 114094
Alignment:
| Q |
11 |
ccaagaatatacacgcccatcccctacagtca |
42 |
Q |
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| T |
114063 |
ccaagaatatacacgcccatcccctacagtca |
114094 |
T |
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