View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13978_low_9 (Length: 475)
Name: NF13978_low_9
Description: NF13978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13978_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 3710822 - 3711058
Alignment:
| Q |
19 |
caccttacattgtcaaccaacggcttcataggaaattgttccatactaagtcaaggcccaatcgataaacgggtcgggtgaccctaagtcattagcttat |
118 |
Q |
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| T |
3710822 |
caccttacattgtcaaccaacggcttcataggaaattgttccatactaaatcaaggcccaatcgataaacgggtcgggtcaccctaagtcattagcttat |
3710921 |
T |
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| Q |
119 |
aaaagaaccatcatatagacaatccctagcaagagacacataggaagatggagtggtcaggaccattgatggaacatgtatcgtctgattcattctagag |
218 |
Q |
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| T |
3710922 |
aaaagaatcaacatatagacaatccctagcaagagtcacattagaagatggagtggtcaggaccattgatggaacaggtatcgtctgattcattctagag |
3711021 |
T |
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| Q |
219 |
caataatggaacaatgacattctgtttgagtgagaaa |
255 |
Q |
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| T |
3711022 |
caataatggaacaatgacattctgtttgagtgagaaa |
3711058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 263 - 461
Target Start/End: Original strand, 3711104 - 3711303
Alignment:
| Q |
263 |
tatctacaactatctgaaaagacaattgttcaagattggattttggggtccattaaaccataatccacccactctaaagactaactagcaacattttcca |
362 |
Q |
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| T |
3711104 |
tatctacaactatctgaaaagacaattgttcaagattggattttggggtccattaaaccataatccacccactctaaagactaactagcaacattttcta |
3711203 |
T |
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| Q |
363 |
aggaacacactttctaacctnnnnnnncctctcgcttacacacttactgacttgaatatatgagtgtttgtaggtaca-ccccacctctagggctgatga |
461 |
Q |
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| T |
3711204 |
aggtacacactttctaacctaaaaaaacctctcgcctacacacttactgacttgaatatatgagtgtttgtaggtacacccccacctcaagggctgatga |
3711303 |
T |
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