View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13979_high_1 (Length: 597)
Name: NF13979_high_1
Description: NF13979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13979_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Original strand, 5045236 - 5045794
Alignment:
| Q |
18 |
atttccatgtgtttctaaaaaacaatggatgttaaaacac-tatata----tagtgacaagagggtaccttttggtgagctgatgatctggtttctacgc |
112 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
5045236 |
atttccatgtatttctaaaaaacaatggatgttaaaacttgtatatagtgatagtgacgagagggaaccttttggtgagctgatgatctggtttctacgc |
5045335 |
T |
|
| Q |
113 |
aatcaatgcatctatatttatactaataatagaatcaatgtatctatatttattctcaatggtaataagaatgggagtttcttggatgacaaaatttgtc |
212 |
Q |
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||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5045336 |
aatcaatgcatctattt-------actaatagaatcaatgtatctatatttattctcaatggtaataagaatgggagtttcttggatgacaaaatttgtc |
5045428 |
T |
|
| Q |
213 |
gtatccgtcagatggagtggacggtgtttgtgcgtcattcttatcag-aaaatatcagtgtgtagatgtgttggctgttcttggttgctccttgcataca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5045429 |
gtatccgtcagatggagtggacggtgtttgtgcgtcattcttatcagaaaaaaatcagtgtgtagatgtgttggctgttcttggttgctccttgcataca |
5045528 |
T |
|
| Q |
312 |
aatatttgtttttatgaatctctgtcccactcaaattagtcatttgttagcacttgatgtgttgggaggtttctatcccacggttgatcttggtgcannn |
411 |
Q |
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||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5045529 |
aatatttgtttttatgaatct-tgttccattcaaattagtcatttgttagcacttgatgtgttgggaggtttctatcccacggttgatcttggtgca-at |
5045626 |
T |
|
| Q |
412 |
nnnnnnnnnnnggacgttcagtcttctttgtaattattaataagaaaaattaaaataacaagtcccttccaaaagctcttcttacgcacttcacaccatt |
511 |
Q |
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| T |
5045627 |
tttctttttttggacgttcagtcttctttgtaattattaataagaaaaattaaaataacaagtccctcccaaaagctcttcttacacacttcacaccatt |
5045726 |
T |
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| Q |
512 |
tcttgttgaagctaagagtattttggactttttcaaatttagttttgttgctttagagagggaattaa |
579 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5045727 |
tcttgttgaagctaagagtattttggactttttcaaatttagttttgttgctttagagagggaattaa |
5045794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 500 - 573
Target Start/End: Original strand, 32312829 - 32312901
Alignment:
| Q |
500 |
cttcacaccatttcttgttgaagctaagagtattttggactttttcaaatttagttttgttgctttagagaggg |
573 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
32312829 |
cttcacaccatttcttgttgaaactaa-agtattttggactttaccaaatttagttttgttgatttagagaggg |
32312901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 15814688 - 15814803
Alignment:
| Q |
242 |
gtgcgtcattcttatca-gaaa-atatcagtgtgtagatgtgttggctgttcttggttgctccttgcatacaaatatttgtttttatgaatctctgtccc |
339 |
Q |
| |
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|||||||| |||||||| |||| | ||||||||| ||||| || |||| |||||| || ||||||||||||||||||||||||||||| ||| ||||| |
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| T |
15814688 |
gtgcgtcactcttatcaagaaacaaatcagtgtgcagatgctttagctgatcttggatgttccttgcatacaaatatttgtttttatgagtct-tgtccg |
15814786 |
T |
|
| Q |
340 |
actcaaattagtcattt |
356 |
Q |
| |
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||||| |||||||||| |
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| T |
15814787 |
actcagtttagtcattt |
15814803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 3703615 - 3703577
Alignment:
| Q |
18 |
atttccatgtgtttctaaaaaacaatggatgttaaaaca |
56 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
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| T |
3703615 |
attttcatgtgtttctaaaaaacaatggatgttaaaaca |
3703577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 20378497 - 20378575
Alignment:
| Q |
300 |
tccttgcatacaaatatttgtttttatgaatctctgtcccactcaaattagtcatttgttagcacttgatgtgttgggag |
379 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| ||||| || |||||||| ||| | |||||| ||||||| |
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| T |
20378497 |
tccttgcatacaaatatttgtttttatgagtct-tgtccgactcagtttggtcatttgataggagctgatgttttgggag |
20378575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 12329036 - 12329074
Alignment:
| Q |
18 |
atttccatgtgtttctaaaaaacaatggatgttaaaaca |
56 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| |
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| T |
12329036 |
attttcatgtgtttctaaaaaacaatggatgtcaaaaca |
12329074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 21538881 - 21538845
Alignment:
| Q |
18 |
atttccatgtgtttctaaaaaacaatggatgttaaaa |
54 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |
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|
| T |
21538881 |
atttccatgtgtttctagaaaacaatggatgtcaaaa |
21538845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 24145221 - 24145259
Alignment:
| Q |
18 |
atttccatgtgtttctaaaaaacaatggatgttaaaaca |
56 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |
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| T |
24145221 |
atttccatgtgtttctaagaaataatggatgttaaaaca |
24145259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 41325021 - 41325057
Alignment:
| Q |
18 |
atttccatgtgtttctaaaaaacaatggatgttaaaa |
54 |
Q |
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|||||||||||||||||| ||||||||||||| |||| |
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| T |
41325021 |
atttccatgtgtttctaagaaacaatggatgtcaaaa |
41325057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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