View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13979_low_2 (Length: 467)
Name: NF13979_low_2
Description: NF13979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13979_low_2 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Original strand, 33907890 - 33908340
Alignment:
| Q |
17 |
aatttgaattatcttaatcttagttatactaacttcacagatgatattccttcaagtattggaaagttgaagaaactgaaatttcttgcattgcaagttt |
116 |
Q |
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| T |
33907890 |
aatttgaattatcttaatcttagttatactaacttcactgatgatattccttcaagtattggaaagttaaagaaactgagatttcttgcattgcaagttt |
33907989 |
T |
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| Q |
117 |
gtctgtttaatggaacattcccggacgagattggagatttggcgaatcttgaaacgttggatttgtcgaacaatttgtttaagagttctacgttgccggt |
216 |
Q |
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| T |
33907990 |
gtctgtttaatggaacattcccggatgagattggagatttggtgaatcttgaaacgttggatttgtcgaacaatttgtttaagagttctacgttgccggt |
33908089 |
T |
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| Q |
217 |
gagttggaccaagttgagtaaattgaaggttttttatatgtatgtctgcaatatttttggtgaaatgcctgaatcaatgggagaaatggtttctttggag |
316 |
Q |
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| T |
33908090 |
gagctggaccaagttgagtaaattgaaggtgttttatatgtatgtctgcaatctttttggtgaaatgcctgaatcaatgggagaaatggtttctttggag |
33908189 |
T |
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| Q |
317 |
gatttggatatttcacaaaatgggttgactgggaaaattcctagtggtttgttcatgttgaagaatcttagaagattgttgcttgcaacgaacgatcttt |
416 |
Q |
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| T |
33908190 |
gatttggatatttcccaaaatgggttgactgggaaaattcctagtggtttgttcatgttgaagaatcttagaagattgttgcttgcaacgaacgatcttt |
33908289 |
T |
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| Q |
417 |
ctggagagttacctgatgtggttgaagcgttaaacttgactaacattgagc |
467 |
Q |
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| T |
33908290 |
ctggagagttacctgatgtggttgaagcgttaaacttgactaacatcgagc |
33908340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 218 - 384
Target Start/End: Complemental strand, 24793193 - 24793027
Alignment:
| Q |
218 |
agttggaccaagttgagtaaattgaaggttttttatatgtatgtctgcaatatttttggtgaaatgcctgaatcaatgggagaaatggtttctttggagg |
317 |
Q |
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| T |
24793193 |
agtttgaccaagttgaacaaattgaaggttctttatgtttatggctctaacttgattggtgaaatacctgaaaaaattggagatatggtttctttggaga |
24793094 |
T |
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| Q |
318 |
atttggatatttcacaaaatgggttgactgggaaaattcctagtggtttgttcatgttgaagaatct |
384 |
Q |
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| T |
24793093 |
cgttggatatgtcaagaaatggtttaactggtgaaattcctagtggtttgttcatgctgaagaatct |
24793027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 396
Target Start/End: Original strand, 33882895 - 33883043
Alignment:
| Q |
235 |
taaattgaaggttttttatatgtatgtctgcaatatttttggtgaaatgcctgaatcaatgggagaaatggtttctttggaggatttggatatttcacaa |
334 |
Q |
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| T |
33882895 |
taaattgaagttgttttatatgcatgactgcaacctgtttggtgaaatgcctgaaacaatag--gaaatggtttc---------tttggatatttcacaa |
33882983 |
T |
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| Q |
335 |
aatgggttgactgggaaaattcctagtggtttgttcatgttgaagaatcttagaagattgtt |
396 |
Q |
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| T |
33882984 |
aa--cgttgagtgaaaaaattcctagcggtttgttcatgctgaagaatcacagcagattgtt |
33883043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 33915449 - 33915485
Alignment:
| Q |
411 |
atctttctggagagttacctgatgtggttgaagcgtt |
447 |
Q |
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| T |
33915449 |
atctttctggagagatacctgatgtggttgaagcgtt |
33915485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 24792988 - 24792955
Alignment:
| Q |
351 |
aaattcctagtggtttgttcatgttgaagaatct |
384 |
Q |
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| T |
24792988 |
aaattcctagtggtttgttcatgctgaagaatct |
24792955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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