View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13979_low_3 (Length: 442)
Name: NF13979_low_3
Description: NF13979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13979_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 10102372 - 10102543
Alignment:
| Q |
1 |
tatttacatgacattcatttctcttttgacatgtaggtttatgattttgtgaaattgaaaaatatttactatgctggaagccatggaatggacatatcaa |
100 |
Q |
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| T |
10102372 |
tatttacatgacattcatttctcttttgacatgtaggtttatgattttgtgaaattgaaaaatatttactatgctggaagccatggaatggacatatcaa |
10102471 |
T |
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| Q |
101 |
cttcactggggtcttccaagtatcatgataagaatcatcaaacaaagggtgttgatgaaaaggtttacaagc |
172 |
Q |
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| T |
10102472 |
cttcactggggtcttccaagtatcatgataagaatcatcaaacaaagggtgttgatgaaaaggtttacaagc |
10102543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 297 - 442
Target Start/End: Original strand, 10102969 - 10103114
Alignment:
| Q |
297 |
ttaacgtctcataatgtattttagggtaatgaagttgtactttatcatccagcagaagaatttttaccaactatccaagaggtaatattattcattaatt |
396 |
Q |
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| T |
10102969 |
ttaacgtctcataatgtattttagggtaatgaagttgtactttatcatccagcagaagaatttttaccaacaatccaagaggtaatattattcattaatt |
10103068 |
T |
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| Q |
397 |
tgttcttaaaatgaacaaacttctttatgtaccctttggttcttca |
442 |
Q |
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| T |
10103069 |
tgttcttaaaatgaacaaacttctttatgtaccctttggttcttca |
10103114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 10102598 - 10102663
Alignment:
| Q |
228 |
atgaaattcacatttctcttattatcagaacaatcttgtttgagacatacataacaataaggataa |
293 |
Q |
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| T |
10102598 |
atgaaattcacatttctcttattatcataacaatcttgtttgagacatacataacaataagaataa |
10102663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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