View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13979_low_6 (Length: 343)
Name: NF13979_low_6
Description: NF13979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13979_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 45275092 - 45275397
Alignment:
| Q |
19 |
tgttgttgtcactaagacaattgttggagaggtcaagactgtctaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttggcaccattttc |
118 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275092 |
tgttgttgtcactaagacaattgtttgagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttggcaccattttc |
45275191 |
T |
|
| Q |
119 |
ctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggcagctgatatgtatgccttagggtca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
45275192 |
ctttccatactcagtggtgagcctttcactcatgttaaaggcgttcatgacattgtcagtggctgccttcacggcggctgctatgtatgccttagggtca |
45275291 |
T |
|
| Q |
219 |
gcggcatcggcgccacgcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaa |
318 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275292 |
gcggcatcggcgccatgcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaa |
45275391 |
T |
|
| Q |
319 |
cctcag |
324 |
Q |
| |
|
|||||| |
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| T |
45275392 |
cctcag |
45275397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 45271559 - 45271861
Alignment:
| Q |
19 |
tgttgttgtcactaagacaattgttggagaggtcaagactgtctaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttggcaccattttc |
118 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45271559 |
tgttgttgtcacgaacacagttgttggagaggtcaagactgtccaaagcgaattgcatcaagtctttgcagtcatcaagagccatcttggcaccattttt |
45271658 |
T |
|
| Q |
119 |
ctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggcagctgatatgtatgccttagggtca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
45271659 |
ctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggctgctgctatgtatgccttagggtca |
45271758 |
T |
|
| Q |
219 |
gcggcatcggcgccacgcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaa |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271759 |
gcggcatcggcgccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaa |
45271858 |
T |
|
| Q |
319 |
cct |
321 |
Q |
| |
|
||| |
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|
| T |
45271859 |
cct |
45271861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 45283333 - 45283636
Alignment:
| Q |
19 |
tgttgttgtcactaagacaattgttggagaggtcaagactgtctaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttggcaccattttc |
118 |
Q |
| |
|
||||||||||| || ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45283333 |
tgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttc |
45283432 |
T |
|
| Q |
119 |
ctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggcagctgatatgtatgccttagggtca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |||||| |
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| T |
45283433 |
ctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttcgggtca |
45283532 |
T |
|
| Q |
219 |
gcggcatcggcgccacgcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaa |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283533 |
gcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgagttttggcacataattctaagatttctttgttgagtttgaa |
45283632 |
T |
|
| Q |
319 |
cctc |
322 |
Q |
| |
|
|||| |
|
|
| T |
45283633 |
cctc |
45283636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 43 - 324
Target Start/End: Original strand, 45294745 - 45295026
Alignment:
| Q |
43 |
tggagaggtcaagactgtctaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttggcaccattttcctttccatactcagtggtgagcct |
142 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
45294745 |
tggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggtaccatcttcctttccatactcagtggtgagcct |
45294844 |
T |
|
| Q |
143 |
ttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggcagctgatatgtatgccttagggtcagcggcatcggcgccacgcacagag |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
45294845 |
gtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatgtatgccttagggtcagcggcgtcggcgccacgcacagag |
45294944 |
T |
|
| Q |
243 |
ctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaacctcag |
324 |
Q |
| |
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||||| ||||||||||||||||| ||||| | ||| ||||||||||||| | |||| |||||||||||||| |||||||| |
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| T |
45294945 |
ctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgttgagttttaacctcag |
45295026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 43 - 324
Target Start/End: Original strand, 45303705 - 45303986
Alignment:
| Q |
43 |
tggagaggtcaagactgtctaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttggcaccattttcctttccatactcagtggtgagcct |
142 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
45303705 |
tggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggtaccatcttcctttccatactcagtggtgagcct |
45303804 |
T |
|
| Q |
143 |
ttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggcagctgatatgtatgccttagggtcagcggcatcggcgccacgcacagag |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
45303805 |
gtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatgtatgccttagggtcagcggcgtcggcgccacgcacagag |
45303904 |
T |
|
| Q |
243 |
ctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaacctcag |
324 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | ||| ||||||||||||| | |||| |||||||||||||| |||||||| |
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| T |
45303905 |
ctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgttgagttttaacctcag |
45303986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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